CreateEpitome models genetic diversity by summarizing a large input dataset into an epitome, a short sequence capturing many overlapping subsequences from the dataset. This tool takes amino acid sequences (or text) as input and produces epitomes of all lengths. For a detailed description of the CreateEpitome program please consult the CreateEpitome web page.

References

D. Yerly, D. Heckerman, T. Allen, T. Suscovich, N. Jojic, C. Kadie, W. Pichler, A. Cerny, C. Brander. Design, expression and processing of epitomized HCV encoded CTL epitopes. J. Immunol, to appear.

D. Nickle, N. Jojic, D. Heckerman, V. Jojic, D. Kirovski, M. Rolland, S. Pond, J. Mullins. Comparison of immunogen designs that optimize peptide coverage: Reply to Fischer et al., PLoS Computational Biology, 4(1):e25, January 2008.

D. Nickle, M. Rolland, M. Jensen, S. Pond, W. Deng, M. Seligman, D. Heckerman, J. Mullins, and N. Jojic. Coping with viral diversity in HIV vaccine design, PLoS Computational Biology, 3(4): e75, April 2007.

N. Jojic, V. Jojic, B. Frey, C. Meek, and D. Heckerman. Using epitomes to model genetic diversity: Rational design of HIV vaccine cocktails. NIPS 2005.

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.

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Cluster: Autocbsusrv05   ( Show timeout info )