LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Thu Aug 07 18:57:31 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 200 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0394
--> 275 residues, sequence name: T0394
Database: T:\CBSU\blastdb\20080108\nr
-> 7 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 10 | 1 | 2 | 2 | 1 | 2 | 3 | 4 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 14.56 | 4.41 | 5.72 | 6.11 |
2 | 14.56 | 0.00 | 14.32 | 15.11 | 14.31 |
3 | 4.41 | 14.32 | 0.00 | 4.90 | 5.98 |
4 | 5.72 | 15.11 | 4.90 | 0.00 | 7.56 |
5 | 6.11 | 14.31 | 5.98 | 7.56 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 47.83 | 48.29 | 47.91 | 50.20 |
2 | 47.83 | 100.00 | 47.83 | 47.83 | 47.79 |
3 | 48.29 | 47.83 | 100.00 | 50.19 | 50.60 |
4 | 47.91 | 47.83 | 50.19 | 100.00 | 49.80 |
5 | 50.20 | 47.79 | 50.60 | 49.80 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 49.80 | 100.00 | 100.00 | 86.75 |
2 | 49.80 | 100.00 | 51.38 | 51.78 | 49.80 |
3 | 100.00 | 51.38 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 51.78 | 100.00 | 100.00 | 54.22 |
5 | 86.75 | 49.80 | 100.00 | 54.22 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.50% helical, 10.74% extended, 48.76% loops/other (query: 45.82% 12.00% 42.18%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1YFK_A not_found 34.34.34.34 NONE -72.195 0 1 88.36% 20.22% OPTM -857.368 -607.120 4.842 0.487 0.762 0.875 0.961 46.910 -70.5 7.350 174.000 -167.5 10.920 135.500 -213.5 0.480 4.090 -7.9 0.650 5.920 -54.6 0.280 -1.160 28.9 -0.250 1.590 -38.9 5.560 15.530 -35.2 12.870 16.530 -82.1 -30.000 39.000 -170.0 -30.000 31.000 -178.0 15.620 322.000 -231.0 40.740 242.000 -283.0 6.150 59.000 -130.0 8.230 52.000 -157.0 5.000 -49.3 0.354 -20.1 60.000 356.0 5.000 -49.7 0.833 -6.2 0.27 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEEEEE----HHHHH-------------HHHHHHHHHHHHHHH-- ---EEEE--HHHHHHHHHHHHHH-------E
Query: 8 RFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNV--KFTHAFSSDLMRTKQTMHGILERSKFCKDMT 85
Sbjct: 3 AYKLVLIRHGESAWNLENRFSGW-YDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQM-WLP 80
-EEEEEEE--------------- ------HHHHHHHHHHHHHHHHH-----EEEE---HHHHHHHHHHHHH---- ---
EEE-HHHHHH---------HHHHHHHH HHHHH------------HHHHHHHHHHHHHHHHHHHHHH---------
Query: 86 VKYDSRLRERKYGVVEGKALSELRAMA-----KAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQ 160
Sbjct: 81 VVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDH--------PFYSNISKDRRYADLTEDQLPS 152
EEE----------------HHHHHHHH-HHHHHHHHH------------- --HHHHH---------------
---HHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHH------------HHHHH--------
Query: 161 GSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGM 240
Sbjct: 153 CES---LKDTIARALPFWNEEIVPQIKEG------KRVLIAAHGNSLRGIVKHLEG---------LSEEAIMELNLPTGI 214
--- HHHHHHHHHHHHHHHHHHHHH-- --EEEEE-HHHHHHHHHHHH- --HHHHH--------
EEEEEE----------EEEEEE--HHHHHH----
Query: 241 SLFIINFEEGREVKPTVQCICMNLQDHLNGLTET 274
Sbjct: 215 PIVYELDKNLKPIKP---MQFLGDEETVRKAMEA 245
-EEEEE--------- -EE---HHHHHHHH--
243 residues (88.36%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.86% helical, 18.18% extended, 45.96% loops/other (query: 45.82% 12.00% 42.18%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1EBB_A c.60.1.1 55.17.17.14 NONE -72.260 0 1 71.64% 21.34% OPTM -701.625 -493.430 4.429 0.507 0.434 0.754 0.942 38.750 -64.0 7.320 162.500 -88.0 11.400 138.000 -225.0 0.260 1.120 29.8 -0.010 -1.410 -42.2 1.330 3.010 64.9 2.040 4.920 -30.9 8.670 18.220 6.7 14.580 22.850 -78.9 -30.000 41.000 -118.0 -30.000 21.000 -142.0 15.520 310.000 -174.0 39.310 273.000 -316.0 6.610 37.000 -35.0 8.530 45.000 -151.0 5.000 -41.2 -0.159 -18.7 0.000 -9.3e+061 5.000 -41.2 -0.328 -10.7 0.19 0.68
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEEEEE----HHHHH-------------HHHHHHHHHHHHHHH-----EEEE--HHHHHHHHHHHHHH-------EEE
Query: 8 RFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSDLMRTKQTMHGILERSKFCKDMTVK 87
Sbjct: 2 ATTLYLTRHGETKWNVERRMQGWQ-DSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGG----RLIPIY 76
-EEEEEEE----HHHH-------- -----HHHHHHHHHHHHH-------EEEE---HHHHHHHHHHH-- ----EE
E-HHHHHH---------HHHHH HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH------------
Query: 88 YDSRLRERKYGVVEGKALSELR----AMAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSP 163
Sbjct: 77 QDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRH--------------- 141
E----------------HHHHH---HHHHHHHHH------------HHHHHHHHHHHHHHHHH--
HHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHH------------HHHHH--------EEE
Query: 164 SNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLF 243
Sbjct: 142 ----------------------------EG--ETVLIVTHGVVLKTLMAAFKDTPLDHLW---------SPPYMYGTSVT 182
-- -EEEEEE-HHHHHHHHHHHH-------- ---------EE
EEE----------EEEE
Query: 244 IINFEEGREVKPTVQCI 260
Sbjct: 183 IIEVDGG-TFHVAVEGD 198
EEEEE-- EEEEEEEEE
197 residues (71.64%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 37.86% helical, 10.70% extended, 51.44% loops/other (query: 45.82% 12.00% 42.18%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1T8P_A c.60.1.1 55.17.17.14 NONE -72.377 0 1 88.00% 21.59% OPTM -729.954 -294.330 4.665 0.496 0.654 0.878 0.931 40.720 -70.5 7.840 164.500 -176.5 10.020 119.500 -212.5 -0.650 1.450 -7.4 -0.060 0.270 -52.2 0.550 8.490 20.8 0.980 3.180 -34.4 8.300 35.080 -54.4 13.890 20.650 -89.4 -30.000 58.000 -177.0 -30.000 35.000 -183.0 15.750 297.000 -237.0 33.700 244.000 -286.0 6.330 62.000 -142.0 8.450 45.000 -164.0 5.000 -42.0 0.266 -17.4 -25.000 396.0 5.000 -42.2 0.255 -7.0 0.30 0.81
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEEEE----HHHHH-------------HHHHHHHHHHHHHHH-- ---EEEE--HHHHHHHHHHHHHH-------
Query: 7 ARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNV--KFTHAFSSDLMRTKQTMHGILERSKFCKDM 84
Sbjct: 2 SKYKLIMLRHGEGAWNKENRFCSW-VDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQ-EWV 79
--EEEEEEE----HHHH------- ------HHHHHHHHHHHHHHH-------EEEE---HHHHHHHHHHHHHH-- ---
EEEE-HHHHHH---------HHHHHH HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-- -----
Query: 85 TVKYDSRLRERKYGVVEGKALSELRA-----MAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEAD-QKEQF 158
Sbjct: 80 PVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYND----------RRYKVCDVPL 149
-EEE----------------HHHHHHHH-HHHHHHHHH---------------HHHHH-- ----------
-----HHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHH------------HHHHH------
Query: 159 SQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNT 238
Sbjct: 150 DQLPRSESLKDVLERLLPYWNERIAPEVLRG------KTILISAHGNSSRALLKHLEG---------ISDEDIINITLPT 214
--------HHHHHHHHHHHHHH--HHHH--- --EEEEE-HHHHHHHHHHHH- -------------
--EEEEEE----------EEEEEE--HHHHHH
Query: 239 GMSLFIINFEEGREVKPTVQCICMNLQDHLNG 270
Sbjct: 215 GVPILLELDENLRAVGPH---QFLGDQEAIQA 243
---EEEEE---------- EE---HHHHHH
242 residues (88.00%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.08% helical, 12.66% extended, 47.26% loops/other (query: 45.82% 12.00% 42.18%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1E59_A c.60.1.1 55.17.17.14 NONE -72.410 0 1 85.82% 20.91% OPTM -818.553 -263.420 4.131 0.490 0.452 0.854 0.939 49.900 -71.9 10.570 224.500 -218.0 12.810 183.500 -263.0 0.870 8.360 -5.1 0.140 -0.430 -45.4 0.750 7.910 30.4 0.530 -2.400 -29.5 7.540 29.290 -38.9 12.030 15.380 -75.7 -30.000 41.000 -161.0 -30.000 27.000 -170.0 11.630 279.000 -150.0 26.750 161.000 -201.0 7.980 71.000 -131.0 9.220 55.000 -160.0 5.000 -53.3 -0.408 -15.6 0.000 -9.3e+061 5.000 -53.3 -0.252 -10.0 0.25 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEEEEE----HHHHH-------------HHHHHHHHHHHHHHH- ----EEEE--HHHHHHHHHHHHHH-------E
Query: 8 RFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNN--VKFTHAFSSDLMRTKQTMHGILERSKFCKDMT 85
Sbjct: 2 VTKLVLVRHGESQWNKENRFTGWY-DVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQ-AWLP 79
-EEEEEEE----HHHH-------- -----HHHHHHHHHHHHHHHH------EEEE---HHHHHHHHHHHHHH-- ----
EEE-HHHHHH---------HHHHHH HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH--------
Query: 86 VKYDSRLRERKYGVVEGKALSELRA-----MAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFS- 159
Sbjct: 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYP---------------GHDPRYAKLSE 144
EEE----------------HHHHHHHH-HHHHHHHHH----------------- -----------
----HHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHH------------HHHHH------
Query: 160 -QGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNT 238
Sbjct: 145 KELPLTESLALTIDRVIPYWNETILPRMKSG------ERVIIAAHGNSLRALVKYLDN---------MSEEEILELNIPT 209
--------HHHHHHHHHHHHHH-HHHHHH-- --EEEEE-HHHHHHHHHHH-- --HHHHHH-----
--EEEEEE----------EEEEEE--HHHHHH
Query: 239 GMSLFIINFEEGREVKPTVQCICMNLQDHLNG 270
Sbjct: 210 GVPLVYEFDENFK----PLKRYYLGNADEIAA 237
---EEEEE----- EEEEEE---HHHHHH
236 residues (85.82%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 0.00% helical, 0.00% extended, 100.00% loops/other (query: 45.82% 12.00% 42.18%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
5PGM_E c.60.1.1 55.17.17.14 NONE -72.445 0 1 82.18% 22.89% OPTM -699.561 -358.600 3.189 0.384 0.530 0.815 0.862 42.420 -67.2 9.770 215.000 -178.0 14.990 171.500 -256.0 -0.710 7.600 8.4 1.610 7.460 -51.2 -0.040 16.100 40.4 2.020 8.230 -33.6 0.800 6.440 -12.4 0.030 -0.640 -54.9 -30.000 0.000 -76.0 -30.000 0.000 -101.0 11.610 290.000 -120.0 30.620 158.000 -199.0 8.980 80.000 -132.0 10.100 68.000 -170.0 5.000 -50.2 -0.412 -19.3 0.000 -9.3e+061 5.000 -50.2 0.556 -8.4 0.41 -0.16
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEEEE----HHHHH-------------HHHHHHHHHHHHHHH---- -EEEE--HHHHHHHHHHHHHH-------EEE
Query: 10 ALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKF--THAFSSDLMRTKQTMHGILERSKFCKDMTVK 87
Sbjct: 2 KLVLVRHGQSEWNEKNLFTGW-VDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLW-IPVN 79
--------------------- ----------------------------------------------------- ----
E-HHHHHH---------HHHHHH HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH---- -----
Query: 88 YDSRLRERKYGVVEGKALSELRA-----MAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQK--EQFSQ 160
Sbjct: 80 RSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSP--------------------FSQKGDERYKY 139
------------------------------------------------- -----------
--- HHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHH------------HHHHH---
Query: 161 GSP-----SNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVT 235
Sbjct: 140 VDPNVLPETESLALVIDRLLPYWQDVIAKDLLSG------KTVMIAAHGNSLRGLVKHLEGISDADIAK---------LN 204
---------------------------------- ----------------------------- --
-----EEEEEE----------EE
Query: 236 PNTGMSLFIINFEEGREVKPTVQ 258
Sbjct: 205 IPTGIPLVFELDENLKPSKPSYY 227
-----------------------
226 residues (82.18%) of query sequence aligned
DONE: Fri Aug 08 01:12:29 2008 EST