LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Fri Aug 08 01:15:25 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 200 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0395
--> 304 residues, sequence name: T0395
Database: T:\CBSU\blastdb\20080108\nr
-> 0 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 8 | 10 | 0 | 0 | 0 | 0 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 7.42 | 10.34 | 17.40 | 20.69 |
2 | 7.42 | 0.00 | 11.32 | 17.90 | 19.02 |
3 | 10.34 | 11.32 | 0.00 | 18.99 | 19.36 |
4 | 17.40 | 17.90 | 18.99 | 0.00 | 19.69 |
5 | 20.69 | 19.02 | 19.36 | 19.69 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 32.58 | 32.75 | 11.68 | 16.22 |
2 | 32.58 | 100.00 | 33.33 | 11.94 | 10.90 |
3 | 32.75 | 33.33 | 100.00 | 11.68 | 11.42 |
4 | 11.68 | 11.94 | 11.68 | 100.00 | 9.63 |
5 | 16.22 | 10.90 | 11.42 | 9.63 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 67.87 | 63.32 | 16.75 | 22.07 |
2 | 67.87 | 100.00 | 66.67 | 17.41 | 25.12 |
3 | 63.32 | 66.67 | 100.00 | 20.56 | 34.25 |
4 | 16.75 | 17.41 | 20.56 | 100.00 | 17.11 |
5 | 22.07 | 25.12 | 34.25 | 17.11 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 38.60% helical, 9.65% extended, 51.75% loops/other (query: 31.25% 9.54% 59.21%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2O8V_A not_found 49.49.49.3 NONE -80.308 0 1 73.68% 17.24% OPTM -568.360 -415.630 1.961 0.498 0.750 0.807 0.817 33.380 -56.6 0.640 17.000 8.5 0.180 -1.500 -113.0 1.460 1.500 13.6 1.720 -0.200 -56.2 2.600 9.090 46.4 3.460 11.710 -41.7 11.120 33.040 -19.8 12.200 34.510 -98.5 -30.000 43.000 -110.0 -30.000 47.000 -167.0 1.880 46.000 54.0 6.450 38.000 -102.0 2.150 25.000 29.0 6.400 37.000 -122.0 5.000 -11.4 -1.510 -14.1 0.000 -9.3e+061 5.000 -11.0 0.041 -2.0 0.25 0.85
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHH-----------------
Query: 16 SYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKF 95
Sbjct: 7 NALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPD--------------- 71
HH----HHHHHHH-HHHHHHH----HHHHHHHHH------EEEE------HHHHHHHHHHH----
--------EEEEE------HHHHHHHHHHHHH-----EE--- --HHHHHHHHHHHHHH--
Query: 96 HRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDR---------------DKCETMAEAFETFLQVFP----- 155
Sbjct: 72 -------IPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRAL 144
EEEE-------HHHHHHHHHHHHH---EEEE------HHHHHHH-------HHHHHHHHHHHH-HHHHHHHHH
--EEEEEE--------------EE-------EEEEE-HH---HHHHHHHHHH-------------------------
Query: 156 ---ETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPN 232
Sbjct: 145 KELNAQTWFAGLRREQSGSRANLPVLAIQRGV---FKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT--- 218
H----EEEE---------------EEE----E EE-------HHHHHHHHHH-----------------------
---------------
Query: 233 PHLRKDKNSTPLKLN 247
Sbjct: 219 ---RKLKRECGLHEG 230
-----------G
224 residues (73.68%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 38.46% helical, 9.05% extended, 52.49% loops/other (query: 31.25% 9.54% 59.21%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2GOY_A not_found 49.49.49.3 NONE -80.572 0 1 72.37% 15.56% OPTM -563.290 -278.490 1.877 0.519 0.688 0.802 0.813 30.000 -54.4 1.380 24.500 31.0 5.990 69.000 -177.5 0.200 3.670 31.4 0.940 1.340 -71.6 2.130 14.480 65.0 4.600 11.290 -63.1 7.950 33.430 3.2 12.530 27.580 -90.0 -30.000 53.000 -104.0 -30.000 47.000 -155.0 3.290 106.000 68.0 9.290 72.000 -118.0 -3.070 17.000 68.0 5.120 23.000 -106.0 5.000 -12.2 -0.256 -21.7 0.000 -9.3e+061 5.000 -13.3 -0.602 -3.7 0.46 0.85
alignment source: OPTM
HHHHHHHHHHHHHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHH-------------------------EEE
Query: 27 IIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTV 106
Sbjct: 30 LPALASSLADKSPQDILKAAFEHFGD---ELWISFSGAED--VVLVDMAWKLNR---------------------NVKVF 83
HHHHHHH----HHHHHHHHHHHH--- EEEE------H HHHHHHHHH--- --EEE
EE------HHHHHHHHHHHHH-----EE-----HHHHHHHHHH HHHH-- --EEEEEE-
Query: 107 FIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFET-----FLQVFP-----------------ETKAIVIGI 164
Sbjct: 84 SLDTGRLHPETYRFIDQVREHYGIAIDVLSPD-PRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQ 162
E------HHHHHHHHHHHHHH----EEE---H HHHHHHHHHH---HHHHH--HHHHHHH-HHHHHHHHH---EEE----
- ------------EE------- EEEEE-HH---HHHHHHHHHH--------------------------------
Query: 165 R-HTDPFGEHLKPIQKTDANWPD----FYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDK 239
Sbjct: 163 RRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGC--EPCTRPVL---P 237
-------------EEE-----------EEE-------HHHHHHHHHH------------------- -------- -
------------
Query: 240 NSTPLKLNFEWE 251
Sbjct: 238 NQHEREGRWWWE 249
-----------E
220 residues (72.37%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 36.00% helical, 10.40% extended, 53.60% loops/other (query: 31.25% 9.54% 59.21%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2OQ2_A not_found 49.49.49.3 NONE -80.583 0 1 79.93% 15.45% OPTM -543.152 -345.670 2.187 0.389 0.758 0.827 0.843 34.660 -56.3 1.540 17.000 -41.0 5.990 71.000 -181.0 1.240 -0.520 -2.8 0.300 -2.700 -58.7 1.810 0.320 36.2 2.270 7.260 -43.5 6.030 29.110 -25.3 10.920 33.990 -96.5 -30.000 38.000 -121.0 -30.000 51.000 -171.0 3.320 39.000 24.0 12.590 75.000 -134.0 1.880 18.000 -47.0 4.930 16.000 -123.0 5.000 -15.4 -1.675 -13.2 0.000 -9.3e+061 5.000 -15.4 0.415 -5.5 0.34 0.89
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----HHHHHHHHHHHHH HHHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHH-------------------
Query: 19 QIAAESDSIIAQTQRAIN-TTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHR 97
Sbjct: 9 DIIVTQEQLDHWNEQLIKLETPQEIIAWSIVTFPH-----LFQTTAFGLTGLVTIDMLSKLSEKYYM------------- 70
-EEEHHHHHHHHHHH-----HHHHHHHHHHH---E EEE----HHHHHHHHHHHHH-------
------EEEEE------HHHHHHHHHHHHH- ----EE-----H HHHH HHHHH
Query: 98 FPLTKLPTVFIDHDDTFKTLENFIEETSLRY----SLSLYESDRDKC----------------------ETMA--EAFET 149
Sbjct: 71 -----PELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHR 145
EEEEE------HHHHHHHHHHHHHH--------EEE-------HHHHHHHH---HHHH-HHHHHHHH-HHHHHHH
HHHH----EEEEEE--------------EE-------EEEEE-HH---HHHHHHHHHH----------------------
Query: 150 FLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEET 229
Sbjct: 146 AYKELH-ISAVFTGRRKSQGSARSQLSIIEIDELNG-ILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHST 223
HHH--- -EEE----------------EEEE----E EEE-------HHHHHHHHHHH----------------------
-----------------------------------
Query: 230 LPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKA 264
Sbjct: 224 QP---VKEGED----ERAGRWTECGIHEASRFAQF 251
-- ------ -------------------F
243 residues (79.93%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.36% helical, 3.86% extended, 61.78% loops/other (query: 31.25% 9.54% 59.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Thioredoxin fold]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1B8X_A c.47.1.5 72.3.3.1 NONE -999.000 0 1 76.32% 13.79% OPTM -357.298 -341.110 1.137 0.282 0.549 0.644 0.713 13.110 -38.0 0.200 -25.000 -49.5 -0.210 -2.500 -125.0 0.910 -0.190 -16.1 2.590 4.150 -76.2 0.160 1.860 22.6 3.460 3.900 -57.4 2.320 11.710 -36.6 9.600 24.850 -102.6 -30.000 21.000 -130.0 -30.000 28.000 -173.0 0.020 -2.000 41.0 0.490 10.000 -68.0 -0.330 9.000 44.0 3.590 -4.000 -101.0 5.000 -0.2 1.861 -21.8 0.000 -9.3e+061 5.000 -0.1 0.447 0.1 0.44 0.82
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------EEEEE----HHHHHHHHHHHHH------------------ -------EEEEE------HHHHHHHHHH
Query: 51 SPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFH------RFPLTKLPTVFIDHDDTFKTLENFIEET 124
Sbjct: 1 SPI-----LGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLP-YYIDGDVKLTQSMAIIRYI 74
--- -EEE------HHHHHHHHH-------EEE----------------------- -EE----EE--HHHHHHHH
HHH-----EE-----H HHHHHHHHHHHHH----EEEEEE----- ---------E
Query: 125 SLRYSLSLYESDRDKC------ETMAEAFETFLQVFPETKAIVIGIRHTD--------------------PFGEHLKPIQ 178
Sbjct: 75 ADKHNM-LGGCPKERAEISMLEGAVLDIRYGVSRIAY----------SKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLN 143
HHH--- ----HHHHHHHHHHHHHHHHHHHHHHHH-- ---HHHHHHHH---HHHHHHHHH----------
E-------EEEEE-HH---HHHHHHHHHH------ ---------------------
Query: 179 KTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPIC------------------------ELYRYGFTSLGNVEETLPNPH 234
Sbjct: 144 GDHV---------THPDFMLYDALDVVLYMD-PMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGD 213
---- --HHHHHHHHHHHHHHH- ---------HHHHHHHHH--HHHH------------------------
------------------------------------------------
Query: 235 LRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHE 282
Sbjct: 214 HPPKSDLVP-RGSRRASVGSRMHYPGAFTYSPTPVTSGIGIGMSAMGS 260
--------- --------------------------------------
232 residues (76.32%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 41.59% helical, 13.72% extended, 44.69% loops/other (query: 31.25% 9.54% 59.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[S-adenosyl-L-methionine-dependent methyltransferases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1SUI_A c.66.1.1 72.7.7.3 NONE -999.000 0 1 59.54% 11.21% OPTM -507.063 -329.860 0.909 0.388 0.456 0.679 0.693 4.900 -32.5 1.580 52.000 23.0 0.610 3.000 -104.5 0.180 -3.050 26.4 1.100 3.600 -53.7 0.220 2.540 69.6 0.490 -2.170 -33.8 6.660 13.310 4.7 6.590 3.480 -71.6 -30.000 25.000 -98.0 -30.000 4.000 -142.0 1.730 35.000 82.0 0.580 10.000 -53.0 0.850 4.000 23.0 2.550 14.000 -101.0 5.000 -0.4 1.052 -19.4 -63.000 291.0 5.000 -0.4 0.505 1.1 0.68 0.71
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHHHH-----HHHHHHHHHH HHHHHHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHH---
Query: 6 AAELCYNLTSSYLQIAAESDSIIAQTQR----AINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEY 81
Sbjct: 27 DALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVY--TGYSLLATALAIPE- 103
HHHHHHHHHH-------HHHHHHHHHH----------HHHHHHHHHHHHH----EEEEE---- -HHHHHHHHH----
----------------------EEEEE------HHHHHHHHHHHHH-----EE-----HHHHHHHHHHHHHH--- -EE
Query: 82 YIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPE--TKA 159
Sbjct: 104 ----------DG----------KILAMDINK--ENYELGLPVIKKAGVDHKIDFREGP---ALPVLDEMIKDEKNHGSYD 158
-E EEEEE---H HHHHHHHHHHH------EEEEE--H HHHHHHHHH---------E
EEEE--------------EE-------EEEEE-HH---HHHHHHHHHH------------------------------
Query: 160 IVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRK 237
Sbjct: 159 FIFVDADKD----------------------------NYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP-PDAPLRK 207
EEE------ HHHHHHHHHHH------EEEE------------ -----HH
181 residues (59.54%) of query sequence aligned
DONE: Fri Aug 08 06:39:45 2008 EST