LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Fri Aug 08 12:34:02 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 200 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0398
--> 292 residues, sequence name: T0398
Database: T:\CBSU\blastdb\20080108\nr
PDB structure 2RIR with significant sequence identity (62.28%) has been detected:
pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From Bacillus Subtilis
This structure may be a good candidate for homology modeling procedure
sequence_identity= 180/289 (62.28%) (length difference of 1.03%)
Query: 2 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAI 61
LTG + +IGGDARQLEIIRKL+ A I LVGFDQLD GF G K IDE+ + +D+I
Sbjct: 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSI 64
Query: 62 LLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVK 121
+LP+S T G V T+FSNE +VL ++ +++TP HCV++SGISN YL + R LVK
Sbjct: 65 ILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVK 124
Query: 122 LMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVK 181
L ERDDIAIYNSIPT EGTI +AIQHTD+TIHG+ VAVLGLGR G ++AR FAALGA VK
Sbjct: 125 LFERDDIAIYNSIPTVEGTIXLAIQHTDYTIHGSQVAVLGLGRTGXTIARTFAALGANVK 184
Query: 182 VGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVID 241
VGAR S LARI E G+ PFH + + ++D+D+CINTIP+ ++ VL+ T ++D
Sbjct: 185 VGARSSAHLARITEXGLVPFHTDELKEHVKDIDICINTIPSXILNQTVLSSXTPKTLILD 244
Query: 242 LASKPGGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVKLLAE 290
LAS+PGGTDF+YAEK+GIKALL PGLPGIVAPKTAG+ILA+VL KLLAE
Sbjct: 245 LASRPGGTDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVLSKLLAE 293
-> 21 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 4 | 10 | 2 | 1 | 18 | 0 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 7.23 | 4.42 | 12.43 | 2.98 |
2 | 7.23 | 0.00 | 4.51 | 8.26 | 6.68 |
3 | 4.42 | 4.51 | 0.00 | 7.06 | 4.44 |
4 | 12.43 | 8.26 | 7.06 | 0.00 | 6.28 |
5 | 2.98 | 6.68 | 4.44 | 6.28 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 93.43 | 94.78 | 67.63 | 100.00 |
2 | 93.43 | 100.00 | 96.27 | 79.83 | 91.79 |
3 | 94.78 | 96.27 | 100.00 | 81.03 | 89.39 |
4 | 67.63 | 79.83 | 81.03 | 100.00 | 59.32 |
5 | 100.00 | 91.79 | 89.39 | 59.32 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 97.08 | 100.00 | 74.82 | 100.00 |
2 | 97.08 | 100.00 | 100.00 | 93.28 | 97.76 |
3 | 100.00 | 100.00 | 100.00 | 88.79 | 100.00 |
4 | 74.82 | 93.28 | 88.79 | 100.00 | 98.31 |
5 | 100.00 | 97.76 | 100.00 | 98.31 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 33.33% helical, 19.44% extended, 47.22% loops/other (query: 40.07% 21.58% 38.36%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2RIR_A not_found 32.32.32.32 NONE -75.672 0 1 97.95% 62.20% OPTM -1483.649 -1138.690 15.249 0.817 0.895 0.978 0.978 110.970 -138.8 50.260 1062.000 -1183.0 70.230 1049.500 -1201.0 4.700 24.650 -64.3 6.010 25.050 -80.6 25.740 168.250 -175.3 39.940 161.640 -196.6 28.130 145.670 -187.7 46.520 132.650 -200.3 -30.000 85.000 -213.0 -30.000 72.000 -215.0 51.650 1114.500 -1117.5 106.040 1077.000 -1136.0 10.700 118.000 -190.0 13.710 104.000 -207.0 5.000 -1.0 -9.713 -8.4 0.000 -9.3e+061 5.000 -1.0 0.568 -1.0 0.66 0.82
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----EEEEE---HHHHHHHHHHHH----EEEEE--------EEEEEE---HHHH----EEEEE--------EEEEEE--
Query: 1 MLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN 80
Sbjct: 5 ALTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 84
----EEEEE---HHHHHHHHHHHH---EEEEE-----------EEE------------EEE-----EE---EE-------
-----HHHHHHH----EEEEE----HHHHHHHHH----EHHHH-----EEHHHHHHHHHHHHHHHHH--------EEEEE
Query: 81 ESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVL 160
Sbjct: 85 EEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIL-AIQHTDYTIHGSQVAVL 163
-EE--HHHHH------EEEE----HHHHHHHHH----EEE----HHHHHHHHHHHHHHH--- -----------EEEEE-
E--HHHHHHHHHHHH---EEEEEE--HHHHHHHHHH------HHHHHHHHHH--EEEE----HH--HHHHHH----EEEE
Query: 161 GLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVI 240
Sbjct: 164 GLGRTG-TIARTFAALGANVKVGARSSAHLARITE-GLVPFHTDELKEHVKDIDICINTIPS-ILNQTVLSSTPK-TLIL 239
------ HHHHHHH---EEEEEE--HHHHHHHH-- -EEEE---HHHH-----EEEE----- --HHHH------ EEEE
EE--------HHHHH---EEEEEE--------HHHHHHHHHHHHHHHHHHH
Query: 241 DLASKPGGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVKLLAEP 291
Sbjct: 240 DLASRPGGTDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVLSKLLAEI 290
---------HHHHHHH--EEEE---HHHHH-HHHHHHHHHHHHHHHHHHHH
286 residues (97.95%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.54% helical, 23.49% extended, 44.97% loops/other (query: 40.07% 21.58% 38.36%)
SCOP classification: [Alpha and beta proteins (a/b)]/[NAD(P)-binding Rossmann-fold domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.2.1.4.11_A c.2.1.4 162.53.53.9 NONE -76.068 0 1 46.92% 17.52% OPTM -594.150 -277.610 1.022 0.743 0.534 0.802 0.950 15.050 -39.1 -0.530 -28.500 237.0 3.390 42.000 -133.5 0.910 3.490 96.8 1.310 6.480 -47.7 1.790 5.200 139.7 5.350 11.990 -44.4 3.430 2.920 105.2 14.940 21.630 -70.6 -30.000 -10.000 -12.0 -30.000 9.000 -108.0 -0.450 -54.000 258.0 5.720 62.000 -100.0 -1.030 -2.000 183.0 3.270 10.000 -93.0 5.000 -8.0 0.300 -21.1 0.000 -9.3e+061 5.000 -8.0 0.176 -4.7 0.04 0.79
alignment source: OPTM
HHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHHH---EEEEEE--HHHHHHHHHH------HHHHHHHHHH--
Query: 135 PTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVD 214
Sbjct: 238 GCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTL---DEIVDKGD 314
HHHHHHHHHHHHH-------EEEEE---HHHHHHHHHHHHH--EEEEE---HHHHHHHH----EE--HH HH-----E
EEEE----H H--HHHHHH----EEEEEE--------HHHHH--- EEEEEE-------
Query: 215 VCINTIPAL-VVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRG----------IKALLVPGLPGIV 271
Sbjct: 315 FFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKII 382
EEE---------HHHH-------EEEE---------HHHHH-----EEEEEE--EEEEE-----EEEE
137 residues (46.92%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.51% helical, 21.74% extended, 42.75% loops/other (query: 40.07% 21.58% 38.36%)
SCOP classification: [Alpha and beta proteins (a/b)]/[NAD(P)-binding Rossmann-fold domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.2.1.4.10_A c.2.1.4 162.53.53.9 NONE -76.105 0 1 45.55% 20.15% OPTM -572.216 -242.050 1.236 0.716 0.433 0.798 0.969 17.760 -41.2 0.230 -26.000 213.0 2.610 24.500 -121.5 1.010 6.290 98.7 0.490 2.900 -43.4 1.860 5.010 141.7 6.140 20.020 -47.8 2.940 -0.340 109.4 18.730 26.000 -75.2 -30.000 -7.000 -13.0 -30.000 13.000 -111.0 -0.350 -33.000 241.0 7.450 73.000 -122.0 -2.460 -4.000 191.0 4.190 10.000 -99.0 5.000 -6.5 0.579 -18.0 -12.000 244.0 5.000 -6.5 0.176 -3.7 0.08 0.91
alignment source: OPTM
HHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHHH---EEEEEE--HHHHHHHHHH------HHHHHHHHHH--
Query: 135 PTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVD 214
Sbjct: 194 GCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQE---GN 270
HHHHHHHHHHHHH-------EEEEE---HHHHHHHHHHHH---EEEEE---HHHHHHHHH---EE--HHHH---- -E
EEEE----H H--HHHHHH----EEEEEE--------HHHHH--- EEEEEE----
Query: 215 VCINTIPAL-VVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRG-IKALLVPGLP 268
Sbjct: 271 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 326
EEE---------HHHH------EEEEE---------HHHHHHH--EEEEEE--EEE
133 residues (45.55%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 43.87% helical, 18.06% extended, 38.06% loops/other (query: 40.07% 21.58% 38.36%)
SCOP classification: [Alpha and beta proteins (a/b)]/[NAD(P)-binding Rossmann-fold domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.2.1.3.18_B c.2.1.3 162.53.53.1 NONE -76.109 0 1 47.60% 17.27% OPTM -553.177 -318.650 0.606 0.759 0.585 0.847 0.953 12.650 -34.3 0.740 -4.500 232.5 1.670 22.500 -107.5 -0.780 0.910 98.2 -0.520 2.030 -41.1 -0.370 2.420 145.5 -0.110 -0.080 -29.1 5.540 7.340 100.1 10.160 10.000 -58.2 -30.000 9.000 -11.0 -30.000 11.000 -109.0 0.150 -65.000 260.0 5.780 32.000 -84.0 -1.840 -4.000 233.0 2.720 14.000 -73.0 5.000 -4.7 -0.506 -17.7 0.000 -9.3e+061 5.000 -4.7 -0.301 -1.6 0.32 0.85
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEEE--HHHHHHHHHHHH-- -EEEEEE- -HHHHHHHHHH------ HHHHHH HHHH--EEEE----H
Query: 153 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGAR---ESDLLARIAEMGMEPFH--ISKAAQ--ELRDVDVCINTIPAL 223
Sbjct: 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82
-EEEEEE---HHHHHHHHHHHHH---EEEEEEE------HHHHHHHH----EE--HHHHHHH------EEEEEE---HHH
H-- HHHHHH----EEEEEE------ --HHHHH---EEEEEE--------HHHHHHHHHHHHHHHHHHH
Query: 224 VVT--ANVLAEMPSHTFVIDLASKPGG--TDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVKLLAEP 291
Sbjct: 83 AHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERMAQSM 154
HHHHHHHHHHH----EEEE-----------HHHH--------EEE-----HHHHHHHHHHHHHHHHHHHHHH
139 residues (47.60%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 28.14% helical, 18.56% extended, 53.29% loops/other (query: 40.07% 21.58% 38.36%)
SCOP classification: [Alpha and beta proteins (a/b)]/[NAD(P)-binding Rossmann-fold domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.2.1.4.8_A c.2.1.4 162.53.53.9 NONE -76.124 0 1 45.89% 20.15% OPTM -531.147 -379.190 1.059 0.730 0.574 0.754 0.934 21.500 -42.4 1.210 28.000 181.0 2.700 26.000 -121.0 -0.810 -6.230 92.1 -0.460 3.030 -54.4 -0.370 0.330 137.0 1.730 11.800 -46.5 0.630 -21.610 103.2 7.780 9.780 -57.0 -30.000 -12.000 -20.0 -30.000 1.000 -99.0 1.300 12.000 204.0 11.330 89.000 -145.0 -1.930 6.000 192.0 6.860 31.000 -93.0 5.000 -6.7 -1.615 -21.3 113.000 217.0 5.000 -6.7 0.653 -4.2 0.13 0.70
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHH-- ----- -EEEEEE--HHHHHHHHHHHH---EEEEEE--HHHHHHHHHH----
Query: 137 AEGTIMMAIQHTD-------FTIHG------ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEP--- 200
Sbjct: 137 GRLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL 216
HHHHHHHHHH---------------------EEEEE---HHHHHHHHHHHH---EEEEEE--HHHHHHHHHHH----EEE
--HHHHHHHHHH--EEEE---- HH--HHHHHH----EEEEEE--------HHHHH-- -EEEEE
Query: 201 --FHISKAAQELRDVDVCINTIPA------LVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKR---------GIKALL 263
Sbjct: 217 LYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYG 296
E--HHHHHHHHHH--EEEE--------------HHHH-------EEEE--------------------EEEE--EEEE--
E------
Query: 264 VPGLPGI 270
Sbjct: 297 VPNMPGA 303
------A
134 residues (45.89%) of query sequence aligned
DONE: Fri Aug 08 19:04:28 2008 EST