LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sat Aug 09 16:58:57 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0405
--> 282 residues, sequence name: T0405
Database: T:\CBSU\blastdb\20080108\nr
-> 0 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 6 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 21.25 | 20.95 | 20.74 | 21.44 |
2 | 21.25 | 0.00 | 21.87 | 16.68 | 22.15 |
3 | 20.95 | 21.87 | 0.00 | 20.35 | 20.53 |
4 | 20.74 | 16.68 | 20.35 | 0.00 | 19.98 |
5 | 21.44 | 22.15 | 20.53 | 19.98 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 11.95 | 9.73 | 13.27 | 11.06 |
2 | 11.95 | 100.00 | 8.33 | 11.90 | 9.59 |
3 | 9.73 | 8.33 | 100.00 | 9.47 | 9.09 |
4 | 13.27 | 11.90 | 9.47 | 100.00 | 10.14 |
5 | 11.06 | 9.59 | 9.09 | 10.14 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 16.37 | 19.47 | 17.70 | 16.37 |
2 | 16.37 | 100.00 | 15.15 | 18.59 | 15.87 |
3 | 19.47 | 15.15 | 100.00 | 14.39 | 17.42 |
4 | 17.70 | 18.59 | 14.39 | 100.00 | 20.65 |
5 | 16.37 | 15.87 | 17.42 | 20.65 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 53.67% helical, 20.90% extended, 25.42% loops/other (query: 52.48% 11.70% 35.82%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2QGU_A not_found 84.84.84.84 NONE -74.096 0 1 63.12% 11.50% OPTM -816.623 -413.620 0.860 0.490 0.390 0.720 0.904 8.390 -39.5 -1.030 -31.500 144.5 -0.660 6.000 -80.5 -1.480 -1.590 74.3 1.330 -0.750 -38.6 -1.110 -5.680 115.6 0.590 -3.530 -23.1 5.940 10.450 56.0 10.820 -4.420 -60.4 -30.000 23.000 -44.0 -30.000 -8.000 -115.0 0.220 2.500 145.5 -1.430 -5.000 -41.0 -0.750 -1.000 117.0 0.850 -8.000 -85.0 5.000 -0.8 -0.479 -20.6 0.000 -9.3e+061 5.000 -0.7 0.633 -0.8 0.35 0.79
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH------------EEEE------HHHHHHH-------
Query: 28 EAAQMRAEEVIGEIAIVIAPLVEKLGIENKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSTDTEKYWRDLPTYWTD 107
Sbjct: 29 ADAQATVKTAVDDVLATIKGDPDLRGGN----LQKVFQLVDQKIV-----------------PRADFKRTTQIAGRFWSQ 87
--HHHHHHHHHHHHHHHHH--HHHH--- HHHHHHHHHHH-- ----HHHHHHH-------
---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----EEEEEE-- -EEEEEEEEE E-EEEEEEEE
Query: 108 DANKIVLPYVLEHIKNNKVRQKLLAFHAWLLGEVVEMNEALGADFRVKLVFES------DMRIRLRVYE-VEQIAIEVHF 180
Sbjct: 88 --------------ATPEQQQQIQDGFKSLLIRTYAGALANVRNQTVAYKPFRAAADDTDVVVRSTVNNNGEPVALDYRV 153
--HHHHHHHHHHHHHHHHHHHHHHHH-----EEEE----------EEEEEEEEEE--EEEEEEEEE
E------------EEEE-----HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Query: 181 LDNHDTEQQHLGYDVSLDADFTEKARLLLRQGILTENLGLEALKAYMKSVLPIAHSLKNLEHLTFEETKKLTK 253
Sbjct: 154 EKSPNG---WKVYDINISG-----------------LWLSETYKNQFADVISKRGGVGGLVQFLDERNAQLAK 206
EEE--E EEEEEEEE-- EEHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-
178 residues (63.12%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 37.55% helical, 29.37% extended, 33.09% loops/other (query: 52.48% 11.70% 35.82%)
SCOP classification: [Multi-domain proteins (alpha and beta)]/[Subunits of heterodimeric actin filament capping protein Capz]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1IZN_A e.43.1.1 3.2.2.1 NONE -999.000 0 1 95.04% 8.09% OPTM -583.609 -334.440 1.631 0.443 0.352 0.657 0.664 12.990 -42.5 1.060 52.500 -95.5 0.030 21.500 -118.5 0.360 -4.270 -34.7 1.440 0.600 -48.4 0.130 -4.880 -6.4 1.670 3.000 -30.0 7.870 30.960 -69.3 14.020 26.620 -78.3 -30.000 50.000 -152.0 -30.000 48.000 -153.0 0.630 16.000 -5.0 0.440 6.000 -64.0 4.030 8.000 -53.0 3.580 -5.000 -94.0 5.000 0.7 0.403 -19.5 174.000 336.0 5.000 0.7 0.886 1.0 0.81 0.35
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH HHHHHH------HHHHHHHHHHHHHH-------
Query: 1 MNETEKLVAALLERNFGKNIGTRYPGNEAAQMRAEEVIGEIAIVI--APLVEKLGIENKTVKKTIPFLYELQKNQFCDMS 78
Sbjct: 7 RVSDEEKVRIAAKFITHAPPGE-----------FNEVFNDVRLLLNNDNLLRE-------GAAHAFAQYNMDQFTPVKIE 68
---HHHHHHHHHHHHH------ HHHHHHHHHHHH--HHHHHH HHHHHHHHHHHH--EEE---
-----EEEE----- -HHHHHHH----------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Query: 79 AYPYPLLLVNGTST----------------DTEKYWRDLPTYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLLGEVV 142
Sbjct: 69 GYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLR--KEASDPQPEDT------------ESA-----LKQWRDACDSALR 129
-----EEE---------EEE-----EEEE----- ------EE--- --- -HHHHHHHHHHHH
HHHHH-----EEEEEE--- EEEEEEEEEE- EEEEEEEEE------------EE
Query: 143 EMNEALGADFRVKLVFESD------------------------MRIRLRVYEVE---QIAIEVHFLDNHDTEQQHLGYDV 195
Sbjct: 130 AYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDG---NVQL 206
HHHHHH---EEEEEEEEEE--EEEEEEEEEEEEEE----EEEEEEEEEEEE----EEEEEEEEEEEEEE---- -EEE
EE-----HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Query: 196 SLDADFTEKARLLLRQGILTENLGLEALKAYMKSVLPIAHSLKNLEHLTFEETKKLTKLLTQEEPKIMEDTDLTSKA 272
Sbjct: 207 VSHKDI---------QDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKI 274
EEEEEE EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------------HHHH
268 residues (95.04%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 39.73% helical, 16.10% extended, 44.18% loops/other (query: 52.48% 11.70% 35.82%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2F4M_A not_found 84.84.84.84 NONE -999.000 0 1 93.62% 9.47% OPTM -494.008 -313.900 1.623 0.410 0.421 0.711 0.786 5.020 -37.0 0.660 39.000 -35.5 -1.140 -7.000 -72.0 0.280 -5.220 -34.3 0.600 -0.270 -46.9 -0.110 -4.330 1.9 0.060 2.040 -24.6 7.520 17.090 -71.5 7.700 7.200 -73.5 -30.000 40.000 -179.0 -30.000 37.000 -185.0 2.170 36.000 11.0 1.320 12.000 -61.0 1.970 -2.000 -70.0 3.780 5.000 -104.0 5.000 0.2 -0.381 -22.3 0.000 -9.3e+061 5.000 0.2 1.255 0.6 0.59 0.66
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHHH-------------HHHHHHHHH HHHHHHHHHHHHHH------ HHHHHHHHHHHHHH-
Query: 4 TEKLVAALLERNFGKNIGTRYPGNEAAQMRAEEV--IGEIAIVIAPLVEKLGIENK------TVKKTIPFLYELQKN--- 72
Sbjct: 169 LKVLQSNIQHVQLYE--------NPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFR 240
HHHHHHHHHHH---- HHHHHHHHHH--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH---EE
-----------EEEE------HHHHHHH--- -------HHHHHHHHHHH---HHHHHHHHHHHH
Query: 73 --QFCDMSAYPYPLLLVNGTSTDTEKYWRDLPT--------------YWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAW 136
Sbjct: 241 WVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNN----PEKLLETRCGRCGEWANCFTLC 316
-------------EE---------HHHH-----EEEEEE----EEEEEE----H HHHHHH-EE-HHHHHHHHHHHH
HHHHHHHHHHH-----EEEEEE---EEEEEEEEEE-EEEEEEEEE------ ------EEEE---
Query: 137 LLGEVVEMNEALGADFRVKLVFESDMRIRLRVYEVEQIAIEVHFLDNHDTE--------QQHLGYDVSLDAD-------- 200
Sbjct: 317 CRAL--------GFE-ARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWR 387
HH-- --E EEEEE---EEEEEEEE----EEEEEE----EE----------------EEEE----EEE-----
--HHHHHHHH---------HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH----------
Query: 201 -FTEKARLLLRQGILTENLGLEALKAYMKSVLPIAH---SLKNLEHLTFEETKKLTKLLTQEEPKIMEDTD 267
Sbjct: 388 YSCKHDEVMSRRT----KVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISPKTPRPGLEHH 454
---HHHHHHH--- --HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------------
264 residues (93.62%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 43.13% helical, 15.00% extended, 41.88% loops/other (query: 52.48% 11.70% 35.82%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
d.144.1.4.1_A d.144.1.4 31.1.1.1 NONE -999.000 0 1 97.87% 10.14% OPTM -687.033 -348.560 1.585 0.451 0.614 0.538 0.693 3.360 -46.7 0.830 24.000 18.0 0.430 0.500 -119.0 -0.130 -2.040 153.2 0.740 -1.980 -51.0 -0.140 1.800 188.3 2.530 2.640 -36.5 1.270 -5.920 84.3 7.200 -1.130 -73.2 -30.000 12.000 -131.0 -30.000 11.000 -155.0 1.550 44.000 97.0 0.450 4.000 -66.0 4.560 9.000 -49.0 2.890 -2.000 -120.0 5.000 0.0 -1.104 -19.1 -129.000 518.0 5.000 0.0 -0.056 1.0 0.67 0.75
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHHH- ------------HHHHHHHHHHHHHHHHHHHHHH H-- ----
Query: 4 TEKLVAALLERNF--GKNIGTRYPGNEAAQMRAEEVIGEIAIVIAPLVE-KLG-----------------------IENK 57
Sbjct: 734 QQVQVIDMLQKVTIDIKSLSAEKYDVS------SQVISQLKQKLENLQNLNLPQSFRVPYDPGLKAGALVIEKCKVMASK 807
HHHHHHHHHHHHHH------------H HHHHHHHHHHHHHHH------EEE--EEEEEEEEE-----EE-----
HHHHHHHHHHHHHH----------- -EEEE---- --
Query: 58 -----------------------------------TVKKTIPFLYELQKNQFCDMSAYPY-------PLLLVNGTS--TD 93
Sbjct: 808 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 887
--EEEEEEE----------EEEEEEE----HHHHHHHHHHHHHHHHHHH-----------EEEEE--EEEEE----EEEH
HHHHHHH----------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----EEEEEE---EEEEEEEEEE-E
Query: 94 TEKYWRDLPTYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLLGEVVEMNEALGADFRVKLVFESDMRIRLRVYEVEQ 173
Sbjct: 888 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDR----HNDNIMISETG----- 958
HHHHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------- ---EEEE----
EEEEEEEE------------EEEE-----HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Query: 174 IAIEVHFLDNHDTEQQHLGYDVSLDADFTEKARLLLRQGILTENLGLEALKAYMKSVLPIAHSLKNLEHLTFEETKKLTK 253
Sbjct: 959 ---NLFHIDFGHINKERVPFVLT--------PDFLFVMGTSGKKTSL-HFQKFQDVCVKAYLALRHH---TNLLIILFSM 1023
EEE----------------H HHHHH---------HH HHHHHHHHHHHHHHHH--H HHHHHHHHHH
HHHH-----------HHHHHHHHHHH
Query: 254 LLTQEEPKIMEDTDLTSKALDFLQKA 279
Sbjct: 1024 MLMTGMPQLTS-----KEDIEYIRDA 1044
HHH-------H HHHHHHHHH-
276 residues (97.87%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 47.17% helical, 8.18% extended, 44.65% loops/other (query: 52.48% 11.70% 35.82%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Adenine nucleotide alpha hydrolase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1JII_A c.26.1.1 23.1.1.1 NONE -999.000 0 1 99.65% 13.17% OPTM -635.795 -420.700 1.582 0.453 0.512 0.692 0.777 16.120 -45.7 -0.270 -25.500 -15.5 0.890 -18.000 -120.5 1.370 3.180 -5.7 1.130 0.280 -58.7 0.190 -3.350 38.7 0.300 -2.050 -31.7 1.620 -2.510 -17.9 6.400 16.020 -79.9 -30.000 19.000 -146.0 -30.000 23.000 -160.0 2.470 38.000 54.0 0.900 20.000 -62.0 2.560 3.000 -91.0 3.830 22.000 -127.0 5.000 0.4 -1.815 -17.6 0.000 -9.3e+061 5.000 0.6 -0.569 0.4 0.74 0.82
alignment source: OPTM
--HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH-- --
Query: 2 NETEKLVAALLERNFGKNIGTRYPGNEAAQMRAEEVIGEIAIVIAPLVEKLG--------------------------IE 55
Sbjct: 18 QTDEQGIEDLLNKEQVTLYCGADPTAD-----SLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQT 92
--HHHHHHHHHH---EEEEEE------ --HHHHHHHHHHHHHHHH--EEEEEE---------------------H
--HHHHHHHHHHHHHH------------EEEE-- ----HHHHHHH------ ----HHHHHHHHHHH---H
Query: 56 NKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNG----TSTDTEKYWRDLPTYWT------DDANKIVLPYVLEHIKNNK 125
Sbjct: 93 EEQVDKNIEGISKQMHNIFE--FGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDS----IQSRLEHGIS-- 164
HHHHHHHHHHHHHHHHH--- ------EEEE-HHHH----HHHHHHH------HHHH-----H HHHHHH---H
HHHHHHHHHHHHHHHHHHHHHH-----EEEEEE-- -EEEEEEEEEE-EEEEEEEEE-------
Query: 126 VRQKLLAFHAWLLGEVVEMNEALGADFRVKLVFES----------------DMRIRLRVYEVEQIAIEVHFLDNHDTEQ- 188
Sbjct: 165 --YTEFTYTILQAIDFGHLNREL--NCKIQVGGSDQWGNITSGIELMRRMYG--------QTDAYGLTIPLVTKSDGKKF 232
HHHHHHHHHHHHHHHHHHH-- --EEEEE---HHHHHHHHHHHHHH--- ---EEEEE------------
-----EEEE----- HHHHHHHH---------HHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH-
Query: 189 -QHLGYDVSLDADFT--EKARLLLRQGILTENLGLEALKAY----MKSVLPIAHSLKNLEH---LTFEETKKLTKLLTQE 258
Sbjct: 233 GKSESGAVWLDAEKTSPYEFYQFWINQ--SDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGE 310
---------------HHHHHHHHH--- ----HHHHHHH----HHHHHHHHHHHHH------HHHHHHHHHHHHHH--H
----------HHHHHHHHHHHH--
Query: 259 EPKIMEDTDLTSKALDFLQKAAQQ 282
Sbjct: 311 ---------------DALNDAIRI 319
HHHHHH---
281 residues (99.65%) of query sequence aligned
DONE: Sun Aug 10 00:30:37 2008 EST