LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Fri Aug 08 19:22:57 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0407
--> 363 residues, sequence name: T0407
Database: T:\CBSU\blastdb\20080108\nr
-> 0 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 13.03 | 14.32 | 9.85 | 10.39 |
2 | 13.03 | 0.00 | 8.04 | 11.20 | 10.87 |
3 | 14.32 | 8.04 | 0.00 | 12.36 | 11.11 |
4 | 9.85 | 11.20 | 12.36 | 0.00 | 9.34 |
5 | 10.39 | 10.87 | 11.11 | 9.34 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 12.33 | 12.16 | 23.08 | 13.70 |
2 | 12.33 | 100.00 | 17.95 | 12.39 | 14.10 |
3 | 12.16 | 17.95 | 100.00 | 13.57 | 20.51 |
4 | 23.08 | 12.39 | 13.57 | 100.00 | 15.14 |
5 | 13.70 | 14.10 | 20.51 | 15.14 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 36.99 | 27.93 | 39.37 | 38.36 |
2 | 36.99 | 100.00 | 44.44 | 43.12 | 43.16 |
3 | 27.93 | 44.44 | 100.00 | 30.77 | 46.58 |
4 | 39.37 | 43.12 | 30.77 | 100.00 | 41.28 |
5 | 38.36 | 43.16 | 46.58 | 41.28 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 30.59% helical, 26.94% extended, 42.47% loops/other (query: 23.69% 28.10% 48.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[7-stranded beta/alpha barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2ANU_A c.6.3.1 206.5.1.1 NONE -95.850 0 1 60.61% 21.15% OPTM -663.821 -503.280 1.663 0.481 0.694 0.866 0.893 38.280 -65.2 3.310 25.500 165.5 8.990 93.500 -215.0 0.090 6.490 121.1 -0.500 0.860 -44.0 -0.390 5.640 186.3 0.010 2.460 -27.6 1.120 -3.690 133.1 4.400 -0.140 -50.8 -30.000 1.000 -33.0 -30.000 33.000 -151.0 4.510 62.000 209.0 18.550 126.000 -172.0 -0.780 3.000 164.0 6.930 28.000 -135.0 5.000 -39.5 -0.207 -12.4 0.000 -9.3e+061 5.000 -43.3 -3.699 -7.4 0.20 0.84
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEEEEEEEEE------HHHHHHHHHH----EEEEE------ ---------- HHHHHHHHHHH
Query: 36 YTTLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYR---------PHKQDVVSDH-----NRSFDLCREQA 101
Sbjct: 5 TEWLLCDFHVHTN-SDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRA 83
-EEEEEEEEE--- ------HHHHHHHHHH----EEEEEEEEE-HHHHHHHHH------------HHHHHHHHHHHHHHH
HH---EEEEEEEEE------EEEEEEE----------HHHHHHHHHH---EEEE----------------HHHHHHHH--
Query: 102 EKLGILLIKGSEITRAMAPGHFNAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEG 181
Sbjct: 84 WEEYGILIPGVEITNNTDLYHIVAVDVKEYVD-PSLPVEEIVEKLKEQNALVIAAHPD-----RKKLSW-----YLWANE 152
HHHH--EEEEEEEEE----EEEEEE------- ----HHHHHHHHHH---EEEE---- ------ HHHH--
--EEEEEE------HHHHHHHHH---EEEEE--------------------EEEEEE----HHHHHHHHH----EE
Query: 182 ----CMHGIEVANGHLYMPEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAA 257
Sbjct: 153 RFKDTFDAWEIANRDDLFN----SVGVKKYRYVANSDFHE-LWHVYSW-------KTLVKSEKN-IEAIKEAIRKNTDVA 219
-------EEEEEE--EE-H HHHH----EEEE----- ------- EEEEEE--- HHHHHHHHHH---EE
EE---
Query: 258 YFHEL 262
Sbjct: 220 IYLRK 224
EE---
220 residues (60.61%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.70% helical, 15.58% extended, 43.72% loops/other (query: 23.69% 28.10% 48.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1VLW_A c.1.10.1 206.78.13.12 NONE -96.390 0 1 50.96% 11.54% OPTM -559.083 -347.480 -0.158 0.447 0.514 0.780 0.889 12.920 -41.9 0.540 7.000 303.0 0.350 11.000 -85.0 1.010 8.730 136.7 -2.470 -2.690 -39.3 1.340 8.870 198.6 -1.480 -1.730 -27.1 1.420 2.050 157.4 7.200 4.610 -50.4 -30.000 0.000 -12.0 -30.000 2.000 -114.0 1.540 40.000 314.0 0.040 7.000 -39.0 -3.270 1.000 213.0 0.820 2.000 -106.0 5.000 -0.2 -2.326 -20.0 0.000 -9.3e+061 5.000 -0.2 0.301 -0.4 0.27 0.41
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEEEE------HHHHHHHHHH----EEEEE----------------HHHHHHHHHHHHH---EEEEEEEEE------EE
Query: 44 HMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAMAPGHF 123
Sbjct: 16 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFT----------VPDADTVIKELSFLKEK----------------GAII 69
EEEE----HHHHHHHHHHHHH----EEEEE--- --HHHHHH--HHHH--- -EEE
EEEEE----------HHHHHHHHHH---EEEE----------------HHHHHHHH----EEEEEE------HHHHHHHH
Query: 124 NAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCL 203
Sbjct: 70 GAGTVTS---------VEQCRKAVESGAEFIVSP-----------HLDEEISQFCKEKGVFYMPGVMT----PTELVKAM 125
EE----H HHHHHHHHH----EE--- --HHHHHHHHH----EE-EE--H HHHHHHHH
H---EEEEE--------------------EEEEEE----HHHHHHHHH----EEEE----- --HHHHHHHHHHH
Query: 204 DKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAAYFHELLI-GREDLLRPFFEKC 277
Sbjct: 126 KLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAF 200
----EEEE-------HHHHHHHH------EEEE--------HHHHHH-----EEE-HHHH---HHHHHHHHHHHH
185 residues (50.96%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.45% helical, 23.28% extended, 41.27% loops/other (query: 23.69% 28.10% 48.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1DL3_A c.1.2.4 206.78.21.8 NONE -96.630 0 1 51.52% 10.97% OPTM -515.954 -455.810 -0.267 0.423 0.439 0.738 0.910 10.950 -44.2 1.500 1.500 298.5 0.690 3.000 -101.0 -0.470 -7.620 144.9 -2.420 -9.040 -35.8 0.340 4.660 206.3 -0.290 4.430 -26.3 1.930 -6.430 160.8 7.280 1.360 -51.1 -30.000 0.000 -1.0 -30.000 -13.000 -115.0 1.060 -9.000 346.0 0.710 0.000 -47.0 -3.570 5.000 266.0 -0.410 -2.000 -95.0 5.000 -0.5 -2.650 -16.4 0.000 -9.3e+061 5.000 -0.4 -0.770 -0.2 0.21 0.67
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEEEEEEE------HHHHHHHHHH----EEEEE----------------HHHHHHHHHHHHH---EEEEEEEEE-----
Query: 41 CDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAMAP 120
Sbjct: 2 VRVKICGITN------LEDALFSVESGADYVGFVFY----PKSKRYIS-----PEDARRISVEL---------------P 51
EEEEE----H HHHHHHHH----EEEEE--- -------H HHHHHHH---- -
-EEEEEEE----------HHHHHHHHHH---EEEE----------------HHHHHHHH----EEEEEE------HHHHH
Query: 121 GHFNAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQ 200
Sbjct: 52 VERVGVFVN-------EEPEKILDVASYVQLNAVQLHG----EEP------IELCRKIAERILVWKAVGVSN---ERDME 111
EEEEEE--- -HHHHHHHHHHH---EEEE--- --H HHHHHHH---EEEEEEE---H HHHHH
HHHH-- -EEEEE--------------------EEEEEE----HHHHHHHHH---- EEEE-- ---- -HHHHHHH
Query: 201 WCLDKN-LTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRT-AAYFHE---LLIG--REDLLRPF 273
Sbjct: 112 RALNYREFPILLDTDWSLILPYRDRFRY-------LVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHDSIKMF 184
HH------EEEE---------------E EEE----HHHHHHHHHHH---EEEE----EEE--EE-HHHHHHHH
HHHH
Query: 274 FEKC 277
Sbjct: 185 IKNA 188
HHHH
187 residues (51.52%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 33.59% helical, 17.94% extended, 48.47% loops/other (query: 23.69% 28.10% 48.21%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2YXO_A not_found 40.40.40.40 NONE -96.728 0 1 60.88% 17.65% OPTM -516.708 -507.890 0.909 0.375 0.588 0.717 0.846 25.600 -52.7 2.060 56.500 75.0 1.920 44.000 -126.5 -0.470 -6.210 64.7 -1.650 -3.060 -45.3 -0.150 -1.260 118.7 -0.360 -1.030 -32.3 2.850 -9.170 61.0 10.060 9.640 -71.1 -30.000 -5.000 -96.0 -30.000 -8.000 -147.0 0.680 0.000 152.0 6.910 67.000 -115.0 -1.230 4.000 46.0 2.780 19.000 -127.0 5.000 -4.0 -0.318 -22.1 0.000 -9.3e+061 5.000 -4.0 0.279 -0.9 0.26 0.60
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEEEEEEE-- ----HHHHHHHHHH----EEEEE-- --------------HHHHHHHHHHHHH-- -EEEEEEEE
Query: 41 CDFHMHSVFSD-GLVWPTVRVDEAYRDGLDAISLTEH----IEYRPHKQDVVSDHNRSFDLCREQAEKLG-ILLIKGSEI 114
Sbjct: 2 VDSHVHTPLCGHAEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLEA 81
EEEE-----------HHHHHHHHHH----EEEEEEE-----------------HHHHHHHHHHHHHH----EEEEEEEEE
E--- ---EEEEEEE---------- HHHHHHHHHH---EEEE---------
Query: 115 TRAM--------------APGHFNAIFLSDSNPLEQKD----------------YKDAFREAKKQGAFMFWNHPGWDSQQ 164
Sbjct: 82 DFHPGTEGFLAQLLRRYPFDYVIGSVHYLGAWPLDHPDHQEEYAWRDLKEVFRAYFQEVEKAARSGLFHAIGHLDLPKKF 161
-----HHHHHHHHH------EEEE----------------------HHHHHHHHHHHHHHHH------EE----------
----- --HHHHHHHH----EEEEEE---- --HHHHHHHHH---EEEEE-----------------
Query: 165 PDTTK-------WWPEHTALYQEGCMHGIEVANGHL--------YMPEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGE 229
Sbjct: 162 GHRLPEEALLELAEPALRAVAEAGL--FLDVNTAGLRRPAKEVYPAPALLRRARELGIGLVLGSDAHRPEEVGFA----- 234
----HHHHHHHHHHHHHHHHHH--E EEEE--------------HHHHHHHHHH---EEEE------------H
---EEEEEE----HHHHHHHHH-- --EEEE--
Query: 230 HRTMTFVFAKERSLQGIREALDNR--RTAAYFHE 261
Sbjct: 235 -------------FPEVQALLAGLGFREAYYFVE 255
HHHHHHHHHH---EEEEEE--
221 residues (60.88%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.10% helical, 18.89% extended, 47.00% loops/other (query: 23.69% 28.10% 48.21%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1H1Y_A c.1.2.2 206.78.21.3 NONE -96.783 0 1 58.68% 11.11% OPTM -498.975 -370.790 0.226 0.383 0.587 0.763 0.813 11.410 -44.2 -0.070 20.500 254.0 -0.120 9.000 -80.0 -1.790 -6.620 104.7 -1.710 1.090 -35.6 -1.990 -7.470 166.6 -0.400 2.560 -24.9 4.280 -14.610 106.1 8.970 8.940 -61.4 -30.000 -1.000 -40.0 -30.000 11.000 -135.0 0.360 -9.000 273.0 1.290 11.000 -54.0 -1.750 -1.000 190.0 4.200 14.000 -110.0 5.000 -0.5 1.487 -22.6 -17.000 261.0 5.000 -0.5 1.230 1.0 0.30 0.61
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEEEE------HHHHHHHHHH----EEEEE----------------HHHHHHHHHHHHH---EEEEEEEEE----
Query: 44 HMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAMA---- 119
Sbjct: 8 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIG------APVIQSLRKHTKAYLDCHLMVTNPSDYVEP 81
EE---------HHHHHHHHHH----EEEEEEE-----------H HHHHHHH-----EEEEEEE-------HHHH
--EEEEEEE----------HHHHHHHHHH--- EEEE----------------HHHHHHHH- ---EEEEEE-
Query: 120 ---PGHFNAIFLSDSNPLEQKDYKDAFREAKKQGA-FMFWNHPGWDSQQPDTTKWWPEHTALYQE-GCMHGIEVAN---- 190
Sbjct: 82 LAKAGASGFTFHIEVS---RDNWQELIQSIKAKGMRPGVSLRPGTP---------VEEVFPLVEAENPVELVLVMTVEPG 149
HHH---EEEEE----- --HHHHHHHHHH---EEEEEE------ ---HHHHH------EEEEE------
-----H HHHHHHHH-- -EEEEE--------------------EEEEEE----HHHHHHHHH----EEEE----
Query: 191 --GHLYMP---EAIQWCLDKN--LTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAAYFHELL 263
Sbjct: 150 FGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPST--------------------------IDVAASAGANCIVAGSSI 203
---------HHHHHHHHHH----EEEEE-------H HHHHHH---EEEE-HHHH
--- HHHHHHHHHHH
Query: 264 IGR---EDLLRPFFEKC 277
Sbjct: 204 FGAAEPGEVISALRKSV 220
----HHHHHHHHHHHHH
213 residues (58.68%) of query sequence aligned
DONE: Sat Aug 09 04:12:23 2008 EST