LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Mon Aug 11 02:38:44 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0413
--> 304 residues, sequence name: T0413
Database: T:\CBSU\blastdb\20080108\nr
-> 1 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 15 | 6 | 0 | 0 | 0 | 1 | 1 | 2 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 11.22 | 9.57 | 10.62 | 9.06 |
2 | 11.22 | 0.00 | 8.63 | 8.05 | 9.63 |
3 | 9.57 | 8.63 | 0.00 | 7.87 | 7.03 |
4 | 10.62 | 8.05 | 7.87 | 0.00 | 7.39 |
5 | 9.06 | 9.63 | 7.03 | 7.39 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 17.32 | 18.18 | 18.18 | 19.05 |
2 | 17.32 | 100.00 | 18.30 | 24.31 | 19.14 |
3 | 18.18 | 18.30 | 100.00 | 17.02 | 24.26 |
4 | 18.18 | 24.31 | 17.02 | 100.00 | 24.25 |
5 | 19.05 | 19.14 | 24.26 | 24.25 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 27.71 | 28.14 | 29.44 | 32.90 |
2 | 27.71 | 100.00 | 33.62 | 63.14 | 36.33 |
3 | 28.14 | 33.62 | 100.00 | 49.36 | 53.19 |
4 | 29.44 | 63.14 | 49.36 | 100.00 | 73.51 |
5 | 32.90 | 36.33 | 53.19 | 73.51 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.69% helical, 20.22% extended, 48.09% loops/other (query: 30.92% 14.47% 54.61%)
SCOP classification: [Alpha and beta proteins (a/b)]/[alpha/beta-Hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1UXO_A c.69.1.31 204.58.58.1 NONE -80.105 0 1 59.87% 13.85% OPTM -525.475 -465.610 0.865 0.522 0.527 0.729 0.911 19.740 -45.0 1.940 13.000 140.0 2.170 20.000 -111.5 0.190 0.270 80.1 -0.140 -6.750 -35.9 0.750 -0.510 125.1 -0.790 -3.040 -18.2 6.060 5.000 71.2 6.850 3.320 -54.4 -30.000 25.000 -47.0 -30.000 8.000 -113.0 2.660 46.000 160.0 2.430 25.000 -71.0 0.230 1.000 154.0 7.130 22.000 -111.0 5.000 -0.5 0.521 -16.8 58.000 307.0 5.000 -0.4 1.322 -0.7 0.28 0.87
alignment source: OPTM
--EEEEE------H HHHHHHHHHHHHH--EEEEE------------------------------HHHHHHHHHHHHHHH
Query: 54 RPVVVVQHGVLRNG-ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIR 132
Sbjct: 2 TKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNPNPL------------------QPR---------LEDWLDTLS 54
--EEEEE-----------HHHHHHHHHH---EEEEE----- --- HHHHHHHHH
HH------EEEEEE---HHHHHHHHHHH--- --EEEEEEE---------------HHH------HHHHHHHH---EEEE
Query: 133 AAEIADCEQVYLFGHSAGGQFVHRLMSSQPH-APFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTIL 211
Sbjct: 55 LYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTL--QLDEFTQG-SFDHQKIIESAKHRAVIA 131
---------EEEEEE--HHHHHHHHHH-------EEEEEEE---------- -------- ---HHHHHHHEEEEEEEE
E---------------HHHHH----HHHHHHHHHHHHHHHHH-------EEEEEE----- --- HHHHHHHHH
Query: 212 AGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGH----DGQ----AMSQVCASL 283
Sbjct: 132 SKDDQI------VP-------------------FSFSKDLAQQIDA----ALYEVQHGGHFLEDEGFTSLPIVYDVLTSY 182
E----- -- HHHHHHHHHH--- EEEEE---------------HHHHHHHHHH
H
Query: 284 W 284
Sbjct: 183 F 183
H
182 residues (59.87%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 32.66% helical, 21.11% extended, 46.23% loops/other (query: 30.92% 14.47% 54.61%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2R8B_A not_found 72.72.72.72 NONE -80.133 0 1 65.79% 15.63% OPTM -367.866 -518.630 1.187 0.523 0.436 0.764 0.974 25.690 -50.8 1.110 48.000 120.5 -0.110 -4.500 -87.0 0.780 8.410 68.4 0.150 -1.750 -43.0 0.940 4.910 117.7 0.390 -0.310 -25.8 2.300 -3.910 73.8 9.210 6.410 -59.2 -30.000 29.000 -79.0 -30.000 24.000 -135.0 3.640 84.000 102.0 4.730 40.000 -88.0 3.480 29.000 67.0 6.220 28.000 -134.0 5.000 -1.5 1.557 -20.3 0.000 -9.3e+061 5.000 -1.6 -0.538 0.4 0.23 0.83
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------EEEEEE----------EEEEE------HHHHHHHHHHHHHH--EEEEE------------------------ -
Query: 34 RNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAG-N 112
Sbjct: 43 PTKDSYFHKSRAGVAG----APLFVLLHGTGGDENQFFDFGARLLP--QATILSPVGD------VSEHGAARFFRRTGEG 110
-------EEEE----- --EEEEE------HHHHHHHHHHH-- --EEEEE--- EEE--EEE--------
-----HHHHHHHHHHHHHHHHH------EEEEEE---HHHHHHHHHHH-----EEEEEEE---------------HHH--
Query: 113 PRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDG 192
Sbjct: 111 VYDVDLERATGKADFIKANREHYQAGP--VIGLGFSNGANILANVLIEQPEL--FDAAVLHPLIPFEPKISPAKP----- 181
----HHHHHHH--HHHHHHHHHH---- EEEEE--HHHHHHHHHHHH---- --EEE----------------
----HHHHHHHH---EEEEE---------------HHHHH----HHHHHHHHHHHHHHHHH-------EEEEEE------
Query: 193 VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHD 272
Sbjct: 182 ------------TRRVLITAGERD-----PICP------------VQLTKALEESLKAQGGT------VETVWHPG-GHE 225
--EEEEEEE--- ---- HHHHHHHHHHHHHH--E EEEEEE-- ---
--HHHHHHHHHHH----
Query: 273 GQAMSQVCASLWFDGRM 289
Sbjct: 226 IRSGEIDAVRGFLAAYG 242
--HHHHHHHHHHH----
200 residues (65.79%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 38.37% helical, 15.70% extended, 45.93% loops/other (query: 30.92% 14.47% 54.61%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2QJW_A not_found 72.72.72.72 NONE -80.170 0 1 56.58% 17.45% OPTM -396.751 -414.530 0.305 0.452 0.416 0.695 0.936 17.810 -41.6 0.440 25.000 212.5 -0.850 -13.000 -79.5 -1.220 -11.330 109.0 0.400 2.120 -53.7 -0.630 -13.470 158.9 -1.100 -1.710 -32.3 3.490 -6.970 102.1 4.140 -3.300 -52.4 -30.000 25.000 -34.0 -30.000 5.000 -116.0 3.340 62.000 189.0 2.070 20.000 -63.0 -0.820 2.000 200.0 2.960 17.000 -85.0 5.000 -0.7 0.420 -17.0 0.000 -9.3e+061 5.000 -0.7 -0.125 0.1 0.33 0.83
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----EEEEE------H HHHHHHHHHHHHH--EEEEE------------------------------HHHHHHHHHHHHH
Query: 52 PDRPVVVVQHGVLRNG-ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLAN 130
Sbjct: 3 GSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDAR--------RDLGQLGD-------VRGRLQRLLEI 67
----EEEEE---------HHHHHHHHHHHH---EEE----HHHH-- -------- HHHHHHHHHHH
HHHH------EEEEEE---HHHHHHHHHHH-----EEEEEEE---------------HHH------HHHHHHHH---EEE
Query: 131 IRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTI 210
Sbjct: 68 ARAATEK--GPVVLAGSSLGSYIAAQVSLQVPTR---ALFLVPPTKGPLPALDAA-------------------AVPISI 123
HHHHH-- --EEEEE--HHHHHHHHHH------ EEE--------------- ---EEE
EE---------------HHHHH----HHHHHHHHHHHHHHHHH-------EEEEEE-- ------HHHHHHHHHHH-
Query: 211 LAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPG---IGHDGQAMSQVCASLWFD 286
Sbjct: 124 VHAWHD-----ELIP-------------------AADVIAWAQARSA----RLLLVDDGHRLGAHVQAASRAFAELLQS 174
EEE--- ---- HHHHHHHHHHH-- EEEEE---------HHHHHHHHHHHHH-
172 residues (56.58%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.74% helical, 24.88% extended, 40.38% loops/other (query: 30.92% 14.47% 54.61%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2O2G_A not_found 72.72.72.72 NONE -80.208 0 1 70.39% 12.69% OPTM -439.788 -573.390 1.005 0.530 0.481 0.752 0.938 25.880 -50.4 -0.090 -19.000 98.0 -0.320 -1.500 -87.0 0.850 6.260 38.6 0.050 -0.580 -42.2 1.000 10.030 82.3 -0.370 -0.560 -23.7 8.760 31.170 18.6 10.990 10.960 -69.8 -30.000 36.000 -94.0 -30.000 25.000 -143.0 2.010 24.000 92.0 1.370 19.000 -59.0 0.800 3.000 44.0 3.000 14.000 -116.0 5.000 -1.1 -0.734 -16.6 0.000 -9.3e+061 5.000 -1.1 0.681 -0.2 0.09 0.72
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------EEEE---------EEEEEE----------EEEEE--- ---HHHHHHHHHHHHHH--EEEEE-----------
Query: 21 HAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGV--LRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGV 98
Sbjct: 7 HQPQEYAVSVSVGE---VKLKGNLVIPNGAT---GIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQ------ 74
----EEEEEEEE-- EEEEEEEE------ EEEEEE---------HHHHHHHHHHHHH--EEEEE----H
-------------------HHHHHHHHHHHHHHHHH------EEEEEE---HHHHHHHHHHH-----EEEEEEE------
Query: 99 ESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYT 178
Sbjct: 75 ---EEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPE-TVQAVVSRGGRPDL 150
HHHHHHHHH------HHHHHHHHHHHHHHHHH-------EEEEEEE-HHHHHHHHHHHH--- -EEEEEEE------
---------HHH------HHHHHHHH---EEEEE---------------HHHHH----HHHHHHHHHHHHHHHHH-----
Query: 179 LPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLP 258
Sbjct: 151 APSALPHV------------------KAPTLLIVGGYD------------LPVIAN--------------EDALEQ--LQ 184
-------- ---EEEEEE--- HHHH-- HHHHHH --
--EEEEEE-------- HHHHHHHHHHH---
Query: 259 FGWQLQVVPGIGHDGQ------AMSQVCASLWFDGR 288
Sbjct: 185 TSKRLVIIPRASHLFEEPGALTAVAQLASEWFHYLR 220
--EEEEEE-----------HHHHHHHHHHHH-----
214 residues (70.39%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 27.78% helical, 22.69% extended, 49.54% loops/other (query: 30.92% 14.47% 54.61%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2FUK_A not_found 72.72.72.72 NONE -80.209 0 1 70.72% 13.92% OPTM -494.398 -578.330 1.036 0.558 0.487 0.748 0.934 24.130 -52.7 1.810 49.000 41.5 1.490 24.000 -115.0 -0.090 -3.680 37.9 0.490 -2.510 -60.0 -0.990 -4.630 90.2 -0.670 0.880 -36.2 7.430 6.010 23.7 5.260 -2.570 -60.0 -30.000 37.000 -109.0 -30.000 30.000 -144.0 3.970 96.000 55.0 0.600 5.000 -53.0 2.370 19.000 48.0 2.950 4.000 -97.0 5.000 -0.3 2.643 -21.5 0.000 -9.3e+061 5.000 -0.3 0.568 -0.0 0.17 0.77
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---------EEEE---------EEEEEE----------EEEEE------ HHHHHHHHHHHHHH--EEEEE-----
Query: 18 ELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRN-----GADYRDFWIPAADRHKLLIVAPTFSD 92
Sbjct: 3 NPLFPTESAALTLDGPV---GPLDVAVDLPEPDVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRS 79
--------EEEEEEE-- EEEEEEEE----------EEEEEE------------HHHHHHHHHHH----EEEEE----
-------------------------HHHHHHHHHHHHHHHHH------EEEEEE---HHHHHHHHHHH-----EEEEEEE
Query: 93 EIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAA 172
Sbjct: 80 -------------VGTSAGSFDHGDG-EQDDLRAVAEWVRAQRPTD--TLWLAGFSFGAYVSLRAAAALEPQ---VLISI 140
------------H HHHHHHHHHHHHHHH---- EEEEEEE-HHHHHHHHHHHHH--- EEEEE
---------------HHH------HHHHHHHH---EEEEE---------------HHHHH----HHHHHHHHHHHHHHHH
Query: 173 NPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAA 252
Sbjct: 141 APPAGRWDFSDVQPP------------------AQWLVIQGDADEIVD------------------------PQAVYDWL 178
--------------- --EEEEEE------- HHHHHHHH
H-------EEEEEE-------- HHHHHHHHHHH-----
Query: 253 AQRGLPFGWQLQVVPGIGHDGQ---AMSQVCASLWFDGRMP 290
Sbjct: 179 ET--LEQQPTLVRMPDTSHFFHRKLIDLRGALQHGVRRWLP 217
-- -----EEEEE----------HHHHHHHHHHHH-----
215 residues (70.72%) of query sequence aligned
DONE: Mon Aug 11 10:31:08 2008 EST