LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Mon Aug 11 15:50:25 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0416
--> 332 residues, sequence name: T0416
Database: T:\CBSU\blastdb\20080108\nr
-> 141 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 105 | 119 | 16 | 0 | 6 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 65.01 | 60.92 | 68.17 | 24.06 |
2 | 65.01 | 0.00 | 24.90 | 18.79 | 69.72 |
3 | 60.92 | 24.90 | 0.00 | 18.71 | 61.48 |
4 | 68.17 | 18.79 | 18.71 | 0.00 | 69.63 |
5 | 24.06 | 69.72 | 61.48 | 69.63 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 49.78 | 12.58 | 17.21 | 37.17 |
2 | 49.78 | 100.00 | 16.89 | 19.81 | 48.89 |
3 | 12.58 | 16.89 | 100.00 | 18.40 | 11.44 |
4 | 17.21 | 19.81 | 18.40 | 100.00 | 18.69 |
5 | 37.17 | 48.89 | 11.44 | 18.69 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 53.33 | 15.23 | 22.79 | 39.47 |
2 | 53.33 | 100.00 | 20.44 | 34.91 | 51.56 |
3 | 15.23 | 20.44 | 100.00 | 22.64 | 16.99 |
4 | 22.79 | 34.91 | 22.64 | 100.00 | 22.43 |
5 | 39.47 | 51.56 | 16.99 | 22.43 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 47.84% helical, 13.79% extended, 38.36% loops/other (query: 53.61% 9.04% 37.35%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
3CRM_A not_found 74.74.74.74 NONE -87.965 0 1 69.58% 26.56% OPTM -742.667 -330.190 7.796 0.345 0.235 0.720 0.925 64.940 -94.7 14.800 299.000 -191.5 27.120 281.000 -375.5 1.440 10.330 51.6 -0.400 1.630 -36.3 13.700 63.220 39.6 16.900 39.170 -66.7 22.790 69.230 -29.2 18.660 49.640 -98.6 -30.000 23.000 -116.0 -30.000 33.000 -166.0 39.280 666.000 -518.0 73.250 529.000 -588.0 3.790 44.000 12.0 10.760 70.000 -177.0 5.000 -72.4 -3.938 -17.7 0.000 -9.3e+061 5.000 -1.0 1.826 -38.0 0.39 0.79
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----EEEEE------HHHHHHHHHHH---EEEE---EEEH-----------HHHHHH---EEE----------HHHHHHH
Query: 5 TKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKR 84
Sbjct: 3 SLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82
---EEEEEE------HHHHHHHHHHH--EEEEEE-----------------HHHHHH--EE------------HHHHHHH
HHHHHHHHHH----EEEE---HHHHHHHHH----------HHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHH----
Query: 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPN 164
Sbjct: 83 ALAAMAKATARGRIPLLVGGTMLYYKALLEGLPY---------------------------------------------- 116
HHHHHHHHHH---EEEEEE--HHHHHHHH-----
-HHHHHHHHHHHHH----HHHHHHH--------EEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- -----
Query: 165 NRKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQG--FEASQ 242
Sbjct: 117 -------------------------------TVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLP 165
EEEEEEEE---HHHHHHHHHHHHHHHHH--HHHHHHHHH----------
-HHEE-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----EEE-- ----HHHHHHHHHH
Query: 243 SMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNK-ERMSLQMMLDEITT 309
Sbjct: 166 SIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLKT 233
------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----EEEE-----HHHHHHHHHHH
231 residues (69.58%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 43.81% helical, 10.18% extended, 46.02% loops/other (query: 53.61% 9.04% 37.35%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2ZE5_A not_found 74.74.74.74 NONE -88.225 0 1 66.27% 15.56% OPTM -714.212 -233.810 2.338 0.399 0.494 0.849 0.856 28.170 -54.4 2.930 36.000 69.5 4.040 56.000 -151.0 -0.730 -0.570 84.0 0.410 -2.300 -40.8 0.270 7.730 125.2 0.470 0.410 -28.9 7.450 27.270 42.0 14.360 26.030 -83.6 -30.000 27.000 -91.0 -30.000 41.000 -160.0 5.910 119.000 61.0 10.090 79.000 -135.0 2.200 53.000 59.0 9.920 57.000 -145.0 5.000 -7.2 -0.179 -20.0 0.000 -9.3e+061 5.000 -7.3 -1.180 -6.3 0.39 0.78
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEEE------HHHHHHHHHHH---EEEE---EEEH-----------HHHHHH---EEE----- -----HHHHHHHHH
Query: 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPP-DASFSAYEFKKRAE 86
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81
EEEEE------HHHHHHHHHHHH---EEE--------------------------EE-------------HHHHHHHHHH
HHHHHHHH----EEEE---HHHHHHHHH------ ----HHHHHHHHHHHHHHHH--HHH HHHHHHH--
Query: 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFED----------ESISEDKMKQVKLKLKELEHLNNNK--LHEYLASFD 154
Sbjct: 82 FEVDWR-KSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAELW 160
HHH--- ---EEEEEE--HHHHHHHHH--------EEEEEE-----HHHHHHHHHHHHHHHH--------HHHHHHHHH-
HHHHHH-----HHHHHHHHHHHHH----HHHHHHH--------EEEEEE---HHHHHHHHHHHHHHHHHHHHHHH
Query: 155 -----KESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNE 229
Sbjct: 161 NYPAARPILEDIDG-----YRCAIRFARKHDLAISQLPNID-----------------AGRHVELIEAIANEYLEHALSQ 218
---HHHHH-----H HHHHHHHHH------------H HHHHHHHHHHHHHHHHHHHHHH
HHH
Query: 230 VQH 232
Sbjct: 219 ERD 221
HH-
220 residues (66.27%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 56.91% helical, 12.23% extended, 30.85% loops/other (query: 53.61% 9.04% 37.35%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2JAQ_A not_found 74.74.74.74 NONE -88.320 0 1 56.63% 11.76% OPTM -711.247 -403.100 0.878 0.379 0.159 0.586 0.934 14.330 -45.7 3.840 85.000 155.0 -0.220 -13.000 -99.5 -0.600 4.290 118.3 -0.650 0.350 -31.3 -0.500 5.700 169.1 -0.200 2.260 -24.5 1.920 5.090 112.2 9.470 7.510 -66.4 -30.000 20.000 -40.0 -30.000 3.000 -125.0 4.480 96.000 177.0 1.780 8.000 -70.0 -0.170 21.000 192.0 3.750 11.000 -96.0 5.000 -4.3 -0.211 -12.6 0.000 -9.3e+061 5.000 -4.2 0.114 -3.0 0.24 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEEE------HHHHHHHHHHH---EEEE---EEEH-----------HHHHHH---EEE----------HHHHHHHHHH
Query: 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87
Sbjct: 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEP----VEENPY---------FEQYYK---DL--------KKTVFKMQIY 56
-EEEEE------HHHHHHHHHHHH--EEE--- ------ HHHH-- -H HHHHHHHHHH
HHHHHHH----EEEE-- -HHHHHHHHH----------HHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHH-----
Query: 88 YIKDITRRGKVPIIAGG--TGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNN 165
Sbjct: 57 MLTARSKQLKNIIFDRTLLEDPIFMKVNYDLNNVD--------------------------------------------- 91
HHHHHHHHH--EEEE-----HHHHHHHHHH-----
HHHHHHHHHHHHH----HHHHHHH--------EEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Query: 166 RKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQ 245
Sbjct: 92 QTDYNTYIDFYNNVV---------LENKLSFD-IVIYLRVSTKTAISRIKKRGR-----------SEELLIG-------- 142
HHHHHHHHHHHHH-- -------- EEEEEE--HHHHHHHHHHH-- HHHHH--
EE-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----EEE------HHHHHHHHHHHHHH
Query: 246 AIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQINK 313
Sbjct: 143 -----------------EEYWETLNKNYEEFYKQNV----YDFPFFVVDAE-LDVKTQIELIMNKLNS 188
HHHHHHHHHHHHHHHHHH- ----EEEEE-- --HHHHHHHHHHHHHH
188 residues (56.63%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 47.65% helical, 15.88% extended, 36.47% loops/other (query: 53.61% 9.04% 37.35%)
SCOP classification: [Alpha and beta proteins (a/b)]/[P-loop containing nucleoside triphosphate hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1KNQ_A c.37.1.17 145.75.75.1 NONE -88.342 0 1 51.20% 11.93% OPTM -510.358 -243.330 0.473 0.413 0.242 0.679 0.849 13.950 -38.9 2.330 52.500 240.5 1.850 -25.000 -110.5 -0.240 -1.510 132.9 -1.110 -1.470 -26.9 0.510 6.030 180.3 0.910 3.760 -24.5 5.670 12.860 117.7 6.200 9.380 -49.8 -30.000 10.000 1.0 -30.000 5.000 -108.0 4.340 62.000 233.0 4.040 29.000 -75.0 -0.040 14.000 271.0 5.290 16.000 -80.0 5.000 -1.1 -0.597 -15.1 -13.000 346.0 5.000 -1.1 -0.658 -3.1 0.70 0.74
alignment source: OPTM
-------EEEEE------HHHHHHHHHHH---EEEE---EEEH-----------HHHHHH---EEE----------HHHH
Query: 2 TEMTKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEF 81
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD------------FLHPRRNIEKMASG-----EPLNDDDRKPW 65
------EEEEEE------HHHHHHHHHHHH--EEEE-- ----HHHHHHHH-- ----HHHHHHH
HHHHHHHHHHHHH----EEEE-- -HHHHHHHHH--- -------HHHHHHHHHHHHHHHH--HHHHHHHHHH-
Query: 82 KKRAEKYIKDITRRGKVPIIAGG--TGLYIQSLLYNYA------FEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASF 153
Sbjct: 66 LQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD---------FDVIESRLKARKG---------- 126
HHHHHHHHHHHHHH--EEEEE-----HHHHHHHH-----EEEEEEE-- HHHHHHHHH----
-HHHHHH-----HHHHHHHHHHHHH----HHHHHHH--------EEEEEE---HHHHHHHHHHHHH
Query: 154 DKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVD 219
Sbjct: 127 --------HFFKTQMLVTQFETLQ------------EPGADETDVLVVDIDQPLEGVVASTIEVIK 172
----HHHHHHHHHH-- --------EEEEE----HHHHHHHHHHHHH
170 residues (51.20%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 44.64% helical, 9.87% extended, 45.49% loops/other (query: 53.61% 9.04% 37.35%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2QGN_A not_found 74.74.74.74 NONE -88.405 0 1 70.48% 35.05% OPTM -633.176 -457.130 7.028 0.415 0.135 0.705 0.929 61.180 -88.7 29.070 597.000 -481.5 31.080 400.500 -533.0 0.300 5.520 58.0 0.960 4.520 -41.9 10.410 63.720 37.3 10.080 36.020 -56.8 15.080 54.550 -9.6 15.410 37.400 -92.4 -30.000 28.000 -102.0 -30.000 38.000 -161.0 36.100 720.000 -543.0 59.420 550.000 -610.0 4.030 61.000 30.0 9.110 59.000 -150.0 5.000 -74.0 -5.124 -10.1 0.000 -9.3e+061 5.000 -1.0 0.763 -59.4 0.39 0.80
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEE------HHHHHHHHHHH---EEEE---EEEH-----------HHHHHH---EEE----------HHHHHHHH
Query: 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA 85
Sbjct: 2 KEKLVAIVGPTAVGKTKTSV-LAKRLNGEVISGDS-QVYRG-DIGTAKITAEE-DGVPHHLIDIKDPSESFSVADFQDLA 77
--EEEEE-------HHHHH- -HHHH-EEEEE--- ----- ----------- ----EE------------HHHHHHHH
HHHHHHHHH----EEEE---HHHHHHHHH----------HHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHH-----
Query: 86 EKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNN 165
Sbjct: 78 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGE--------------------------------------------- 112
HHHHHHHHHH--EEEEE---HHHHHHHH-------
HHHHHHHHHHHHH----HHHHHHH--------EEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Query: 166 RKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQ 245
Sbjct: 113 ---------------------------TPSPYNLVIGLTE-RDVLYDRINRRVDQV-EEGLIDEAKKLYDRGIRDCQSVQ 163
-----EE--EE-- HHHHHHHHHHHHH-- ---HHHHHHHHHHH-----HHHH
EE-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----EEE------HHH HHHHHHHHHHHHH-
Query: 246 AIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQM---MLDEITTQINKRSS 316
Sbjct: 164 AIGYKE-YDYLDGNVTLEEAIDTLKRNSRRYAKRQLTWFRNKANVTWFDTD-VDFDKKIEIHNFIAGKLEEKSK 235
------ ---------HHHHHHHHHHHHHHHHHHHHHHHHH-----EE--- --HHHH--HHHHHHHHHHHH--
234 residues (70.48%) of query sequence aligned
DONE: Tue Aug 12 02:01:30 2008 EST