LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sun Aug 10 11:16:33 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0421
--> 300 residues, sequence name: T0421
Database: T:\CBSU\blastdb\20080108\nr
-> 166 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 0 | 64 | 94 | 4 | 4 | 1 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 5.93 | 20.09 | 20.38 | 16.35 |
2 | 5.93 | 0.00 | 19.53 | 20.04 | 15.81 |
3 | 20.09 | 19.53 | 0.00 | 9.25 | 19.43 |
4 | 20.38 | 20.04 | 9.25 | 0.00 | 19.35 |
5 | 16.35 | 15.81 | 19.43 | 19.35 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 26.46 | 19.29 | 20.30 | 11.17 |
2 | 26.46 | 100.00 | 14.29 | 13.23 | 11.64 |
3 | 19.29 | 14.29 | 100.00 | 18.56 | 8.96 |
4 | 20.30 | 13.23 | 18.56 | 100.00 | 9.09 |
5 | 11.17 | 11.64 | 8.96 | 9.09 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 36.55 | 32.49 | 18.27 |
2 | 100.00 | 100.00 | 35.45 | 28.57 | 17.99 |
3 | 36.55 | 35.45 | 100.00 | 71.21 | 17.91 |
4 | 32.49 | 28.57 | 71.21 | 100.00 | 23.11 |
5 | 18.27 | 17.99 | 17.91 | 23.11 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 48.31% helical, 11.59% extended, 40.10% loops/other (query: 42.67% 12.00% 45.33%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2PLR_A not_found 46.46.46.46 NONE -79.709 0 1 65.67% 15.23% OPTM -579.039 -418.090 1.178 0.460 0.455 0.790 0.844 12.600 -42.5 1.270 -15.500 40.5 0.700 2.000 -116.0 1.130 6.530 44.7 2.560 4.650 -40.1 1.490 5.220 84.2 0.300 -0.000 -25.8 11.680 7.060 18.3 14.030 19.710 -70.7 -30.000 11.000 -84.0 -30.000 17.000 -144.0 1.250 -37.000 112.0 2.750 28.000 -76.0 -2.940 3.000 89.0 2.660 -2.000 -87.0 5.000 -3.1 0.078 -18.4 0.000 -9.3e+061 5.000 -3.1 -1.432 -1.3 0.34 0.88
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEE---------HHHHHHHH--- --EEEEEE---- -HHHHHHHHHHHHHHH-
Query: 82 GKRVMAVFEGRDAAGKGGAIHATTANMN-PRSARVVALTKP----------------TETERGQWYFQRYVATF------ 138
Sbjct: 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILP 81
---EEEEEE------HHHHHHHHHHHH-----EEEEE-----HHHHHHHHH-------HHHHHHHHHHHHHHHHHH----
----EEEEE-------EEEEE------HHHHHHHHHHH HHHHHHHHH---EEEEEEEE--HHHHHHHHHHHH--
Query: 139 PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEA------PRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD 212
Sbjct: 82 LKSGFIVISDRY-----------------IYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK 144
-----EEEEE-- HHHHHHHHH-----HHHHHHH--------EEEEEE--HHHHHHHHHH----
--- --- --HHHHHHHHHHHHHHHHHHHHHHH-------EEEEE---- HHHHHHHHHHHHHH-----
Query: 213 PLK------IWK-LSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK-RRSRINVIRHMLTKLDYDG 278
Sbjct: 145 IKPQEAGADIFPGLSP-----EEGFLKYQGLITEVYDKLVKD-ENFIVIDGTKTPKEIQIQIRKFVGELIDNSF 212
---------------H HHHHHHHHHHHHHHHHHH--- ---EEEE----HHHHHHHHHHHHHHHHH---
197 residues (65.67%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 56.91% helical, 11.17% extended, 31.91% loops/other (query: 42.67% 12.00% 45.33%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2JAQ_A not_found 46.46.46.46 NONE -79.759 0 1 62.33% 10.58% OPTM -465.370 -424.440 0.544 0.457 0.442 0.793 0.793 8.060 -39.5 1.080 1.000 151.5 0.850 8.500 -93.5 -1.790 -2.950 95.3 -0.210 -3.360 -31.1 -0.110 1.560 131.3 0.020 -0.020 -23.4 3.380 9.390 75.5 6.700 6.790 -53.8 -30.000 12.000 -51.0 -30.000 4.000 -122.0 2.750 -14.500 145.0 0.100 3.000 -49.0 -2.920 7.000 135.0 4.420 20.000 -100.0 5.000 -0.8 -0.545 -16.4 0.000 -9.3e+061 5.000 -0.8 0.301 -0.7 0.10 0.70
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEE---------HHHHHHHH-----EEEEEE-----H HHHHHHHHHHHHHH-----EEEEE-------
Query: 86 MAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTE-----------TERGQWYFQRYVATFPTAGEFVLFDRSWYNR 154
Sbjct: 3 IAIFGTVG-AGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKN----IIFDRT---- 73
EEE----- -HHHHHHHHHHHH--EEE---------HHHH---HHHHHHHHHHHHHHHHHHHH--E EEE---
EEEEE------HHHHHHHHHH HHHHHHHHHH--- EEEEEEEE--HHHHHHHHHHHH----------H
Query: 155 AGVEPVMGFCTPDQYEQFLKE--------APRFEEMIANEGI-----HLFKFWINIGREMQLKRFHDRRHDPLKIWKLSP 221
Sbjct: 74 --------LLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENKLSFDIVIYLRVSTKTAISRIKKRGR--------SE 137
--HHHHHHHHHH-----HHHHHHHHHHHHH----------EEEEEE--HHHHHHHHHHH--H HH
HHHHHHHHHHHHHHHHHHHHHH-------EEEEE----HHHHHHHHHHHHHH-
Query: 222 MDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKL 274
Sbjct: 138 ELLIGEEYWETLNKNYEEFYKQNVYD-FPFFVVDAELDVKTQIELIMNKLNSI 189
HH--HHHHHHHHHHHHHHHHHH---- -EEEEE----HHHHHHHHHHHHHH-I
187 residues (62.33%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 46.44% helical, 15.48% extended, 38.08% loops/other (query: 42.67% 12.00% 45.33%)
SCOP classification: [Alpha and beta proteins (a/b)]/[P-loop containing nucleoside triphosphate hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1D2N_A c.37.1.20 190.49.49.3 NONE -80.199 0 1 79.33% 11.19% OPTM -431.222 -350.500 1.331 0.413 0.344 0.796 0.864 15.800 -47.1 -0.620 -43.500 10.5 -1.370 -37.500 -76.0 1.100 4.490 8.4 1.360 1.020 -42.6 0.330 -3.520 43.0 1.560 5.720 -27.1 8.580 1.270 -20.9 13.170 11.460 -78.5 -30.000 2.000 -123.0 -30.000 7.000 -164.0 0.040 -24.000 60.0 0.870 0.000 -54.0 0.380 5.000 -2.0 6.510 38.000 -123.0 5.000 -0.1 -2.527 -19.6 145.000 286.0 5.000 -0.1 0.544 0.5 0.36 0.85
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------------------------HHHHHHHHHHHHHHHHHHHHHHHH---- EEEEE---------HHHHHHHH----
Query: 33 PDLPKWIDEEAFRSDDYPYKKKLDREEYEETLTKLQIELVKVQFWMQATGKR--VMAVFEGRDAAGKGGAIHATTANMNP 110
Sbjct: 505 EDYASYIMNGIIKWG--------------DPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 570
--------------- HHHHHHHHHHHHHHHHHHH-----EEEEEEE------HHHHHHHHHHHH--
-EEEEEE---- -HHHHHHHHHHHHHHH-----EEEEE-- -----EEEEE------HHHHHHHHHHHHHHHHHH
Query: 111 RSARVVALTKP---TETERGQWYFQRYVATFPTAGEFVLFDR----SWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMI 183
Sbjct: 571 PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY-----VPIGPRFS----NLVLQALLVLLKKA 641
-EEEEE---------HHHHHHHHHHHHHHHH---EEEEEE--HHHH--- -------- HHHHHHHHHH----
HH---EEEEEEEE--HHHHHHH HHHHH---------- HHHHHHHHHHHHH HHHHHHHHHH-------EEEEE----
Query: 184 ANEGIHLFKFWINIGREMQLKR-FHDRRHDPLKIWKLS--PMDIAALSKWDDY-TGKRDRMLKETHTEHGPWAVIRGNDK 259
Sbjct: 642 PPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK----KVWIG--- 714
-----EEEEEEEE--HHHHHH--------EEEE---EEEHHHHHHHHHHH----HHHHHHHHHHH--- EEEE-
HHHHHHHHHHHHHH---------------HHHHHH--HHHH
Query: 260 RRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILGSGPGFLR 300
Sbjct: 715 ---IKKLLMLIEMSLQMD----------PEYRVRKFLALLR 742
HHHHHHHHHHH---- ---HHHHHHHHHH
238 residues (79.33%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 49.14% helical, 9.28% extended, 41.58% loops/other (query: 42.67% 12.00% 45.33%)
SCOP classification: [Alpha and beta proteins (a/b)]/[P-loop containing nucleoside triphosphate hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1FNN_A c.37.1.20 190.49.49.3 NONE -999.000 0 1 88.00% 13.64% OPTM -748.537 -373.780 1.481 0.367 0.462 0.579 0.817 9.770 -48.4 -0.870 -75.000 80.0 0.990 15.500 -125.5 -0.750 -11.870 165.3 0.230 -1.750 -46.9 -1.220 -10.730 210.1 -0.300 0.320 -26.8 1.510 2.800 86.8 8.410 8.990 -76.7 -30.000 6.000 -147.0 -30.000 10.000 -182.0 -0.530 -79.000 189.0 -0.240 3.000 -50.0 -1.880 -43.000 16.0 4.880 10.000 -134.0 5.000 0.7 -1.861 -18.9 37.000 524.0 5.000 0.7 0.230 1.2 0.37 0.82
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--------------------HHHHHHHHHHHHHHHHHHHHHHHH-- --EEEEE---------HHHHHHHH--- --EEE
Query: 37 KWIDEEAFRSDDYPYKKKLDREEYEETLTKLQIELVKVQFWMQATG-KRVMAVFEGRDAAGKGGAIHATTANMN-PRSAR 114
Sbjct: 1 AIVVDDSVFSPSYVPKRLPHREQQLQQLDIL------LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR 74
---------------------HHHHHHHHHH HHHHHH-------EEEEE------HHHHHHHHHHHH------E
EEE-- ---HHHHHHHHHHHHHHH-----EEEEE-------EEEEE------HHHH
Query: 115 VVALT-------------------------KPTETERGQWYFQRYVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQY 169
Sbjct: 75 FVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER--DLYMFLVLDDAFN-----------LAPDIL 141
EEEEE------HHHHHHHHHHH-----------HHHHHHHHHHHHHH- ---EEEEEE---- --HHHH
HHHHHHHHHHHHHHHH---EEEEEEEE--HHHHH HHHHHHH------- ---HHHHHH HHHHHHH HHH
Query: 170 EQFLKEAPRFEEMIANEGIHLFKFWINIGREMQL---KRFHDRRHDPLKIW-KLSPMDIAA--LSKWDDY-------TGK 236
Sbjct: 142 STFIRLGQEADKLGA---FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDI 218
HHHHHH---HHHH-- --EEEEEEE---HHHH---HHHHHHH---EEE-----HHHHHHHHHHHHHHH-------HHH
HHHHHHH- ------EEEEE----HHHHHHHHHHHHHH---------- -----HHHHHH--HHH
Query: 237 RDRMLKET------HTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKDEAA-----------IGEVDEKILGSGPGFL 299
Sbjct: 219 LQMIADITGAQTPLDTNRG---------DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHE 289
HHHHHHHH----------- -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-----HHHHHH--HHH
H
Query: 300 R 300
Sbjct: 290 K 290
H
264 residues (88.00%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 36.00% helical, 10.46% extended, 53.54% loops/other (query: 42.67% 12.00% 45.33%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Thiamin diphosphate-binding fold (THDP-binding)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1DTW_A c.36.1.11 190.9.9.1 NONE -999.000 0 1 99.67% 13.38% OPTM -400.420 -340.260 1.411 0.364 0.325 0.612 0.770 5.250 -48.3 0.620 -7.500 48.0 0.120 -31.000 -101.0 -0.400 3.370 194.6 0.470 -2.480 -42.1 0.200 3.510 231.2 -0.660 -4.350 -25.9 -0.250 -3.210 108.0 11.190 10.660 -81.5 -30.000 8.000 -145.0 -30.000 25.000 -199.0 1.360 -34.000 160.0 0.080 6.000 -60.0 1.330 -35.000 14.0 3.710 0.000 -141.0 5.000 -0.9 -0.844 -18.8 0.000 -9.3e+061 5.000 -0.9 -0.215 0.1 0.76 0.84
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------HH---------E--------E----------------------------HHHHHHHHHHHHH HHHHHHHHHH
Query: 2 ALDEAPAEARPGSRAVELEIDGRSRIFDIDDPDLPKWIDEEAFRSDDYPYKKKLDREEYEETLTKLQI--ELVKVQFWMQ 79
Sbjct: 8 QFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQG------QIINPSEDPH---LPKEKVLKLYKSMTLLNTMDRILYESQ 78
---------------------------------- ---------- -HHHHHHHHHHHHHHHHHHHHHHHHH-
H----EEEEE---------HHHHHHHH-----EEEEEE-----HHHHH HHHHHHHHHH---- -EEEEE-----
Query: 80 ATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG-----QWYFQRYVATFPTA--GEFVLFDRSWY 152
Sbjct: 79 RQGR-----ISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCK 153
---- ---------HHHHHHHHH------EEE-----HHHHHH----HHHHHHHHH--------------------
--EEEEE------HHHHHHHHHHHHHHHHHHHH---EEEEEEEE-- HHHHHHHHHHHH-- --
Query: 153 NRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIG-REMQLKRFHDRRHD-----------------PL 214
Sbjct: 154 ERHFVTISSPLAT--QIPQAVGAAYAAKRANANR-VVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
--EE--------H HHHHHHHHHHHHHH----- EEEEEE------HHHHHHHHHHHH----EEEEEEE--EE--EE--
- -----H HHHHHHHHHHHHHHHHHHHHHH-------EEEEE-- --HHHHHH
Query: 215 K-------IWKLSP-----------MDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGN-----------DKRRSRIN 265
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDV--FAVYNATKEARRRAVAENQ---PFLIEAMTYRIGHHSTSDDSSAYRHPIS 305
-----------------EEEEEE---HH HHHHHHHHHHHHHHHH--- EEEEEE------------------HHHH
HHHHHHHH---------------HHHHHH--HHHH
Query: 266 VIRHMLTKLDYDGKDEAAIGEVDEKILGSGPGFLR 300
Sbjct: 306 RLRHYLLSQ----------GWWDEEQEKAWRKQSR 330
HHHHHH--- ---HHHHHHHHHHHHH
299 residues (99.67%) of query sequence aligned
DONE: Sun Aug 10 20:09:48 2008 EST