LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sun Aug 10 20:14:41 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0422
--> 357 residues, sequence name: T0422
Database: T:\CBSU\blastdb\20080108\nr
-> 212 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 5 | 156 | 47 | 7 | 2 | 10 | 9 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 4.90 | 4.64 | 4.23 | 4.86 |
2 | 4.90 | 0.00 | 2.92 | 4.34 | 7.11 |
3 | 4.64 | 2.92 | 0.00 | 3.72 | 7.04 |
4 | 4.23 | 4.34 | 3.72 | 0.00 | 6.28 |
5 | 4.86 | 7.11 | 7.04 | 6.28 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 83.82 | 43.70 | 43.22 | 41.98 |
2 | 83.82 | 100.00 | 100.00 | 42.96 | 58.24 |
3 | 43.70 | 100.00 | 100.00 | 42.91 | 33.98 |
4 | 43.22 | 42.96 | 42.91 | 100.00 | 41.22 |
5 | 41.98 | 58.24 | 33.98 | 41.22 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 90.80 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 90.73 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 91.60 |
5 | 100.00 | 90.80 | 90.73 | 91.60 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 44.57% helical, 10.49% extended, 44.94% loops/other (query: 49.58% 5.88% 44.54%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
3B9P_A not_found 58.58.58.58 NONE -93.194 0 1 74.79% 48.07% OPTM -1333.425 -870.540 14.283 0.628 0.612 0.925 0.983 89.840 -120.8 34.510 772.000 -691.0 51.490 817.500 -925.0 4.210 19.940 11.1 3.720 18.850 -63.1 22.790 126.900 -58.7 46.290 123.960 -153.5 32.380 91.890 -86.8 35.330 98.800 -170.3 -30.000 39.000 -146.0 -30.000 48.000 -204.0 48.770 1117.000 -924.0 135.030 1101.000 -1157.0 5.710 62.000 -39.0 17.340 85.000 -201.0 5.000 -1.0 -4.879 -6.4 0.000 -9.3e+061 5.000 -1.0 -1.432 -84.1 0.43 0.81
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHH-HHHHHH------EEEEE-----HHHHHHHHHHHH----
Query: 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144
Sbjct: 464 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 543
-HHHHHH------------------HHHHHHHHHH-HHHHH-------------EEEEE------HHHHHHHHHHH---E
EEEE----HH------HHHHHHHHHHHHHH----EEEE-HHHHHH---------HHHHHHHHHHHHH----------EEE
Query: 145 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV 224
Sbjct: 544 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSEREAS-----RRLKTEFLVEFDGLP-----RIVV 613
EEEEE-----------HHHHHHHHHHHHHH---EEEEEE------------ HHHHHHHHHHHHH-- -EEE
EE--------HHHHHHHH--EEE-----HHHHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Query: 225 VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Sbjct: 614 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 693
EEEE-------HHHHHH--EEEE-----HHHHHHHHHHHH--------HHHHHHHHHH-----HHHHHHHHHHH--HHHH
HHHHH-HHH---HH-HHHHHHHHHHHHHH------HHHHHHHHHH
Query: 305 SLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349
Sbjct: 694 ELNISAMRAIT--------EQDFHSSLKRIRRSVAPQSLNSYEKW 730
----------- HHHHHHH---------HHHHHHHHHH
267 residues (74.79%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 37.69% helical, 14.64% extended, 47.66% loops/other (query: 49.58% 5.88% 44.54%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1XWI_A not_found 58.58.58.58 NONE -93.501 0 1 78.43% 43.93% OPTM -1114.234 -773.790 10.361 0.626 0.719 0.855 0.982 80.350 -117.2 15.680 449.000 -460.0 35.790 700.500 -823.0 0.960 4.290 -19.5 6.660 26.510 -84.1 2.790 12.540 8.6 33.330 125.560 -156.6 3.250 13.570 -40.9 39.020 97.980 -172.1 -30.000 -1.000 -136.0 -30.000 25.000 -200.0 31.810 773.000 -683.0 92.810 912.000 -973.0 0.500 -28.000 -45.0 9.290 39.000 -155.0 5.000 -1.0 -4.226 -10.7 0.000 -9.3e+061 5.000 -1.0 0.580 -60.7 0.28 0.59
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----HHHHH-HHHHHHHHHHHHHHHHH-HHHHHH------EEEEE-----HHHHHHHHHHHH-- --EEEE----HH--
Query: 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISASSLTSK 156
Sbjct: 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207
-----------HHHHHHHHHHHHHHHH-------------EEEEE------HHHHHHHHHHH----EEEEEE--------
----HHHHHHHHHHHHHH----EEEE-HHHHHH---------HHHHHHHHHHHHH----------EEEEE--------HH
Query: 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236
Sbjct: 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDS 286
----HHHHHHHHHHHHH---EEEEEE---------------HHHHHHHHHHHHHH------- -EEEEEEE-------HH
HHHHHH--EEE-----HHHHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-
Query: 237 AARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD------ 310
Sbjct: 287 AIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVR 366
HHH---EEEE-----HHHHHHHHHHHH--------HHHHHHHHH------HHHHHHHHHHHH-HHHHHHHH--EEEEEEE
HHH---HH- HHHHHHHHHHHHHH------HHHHHHHHHHHHH-----
Query: 311 -----------------------------IATITPDQV--RPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK 357
Sbjct: 367 GPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
E-------EEEEEEEE-------EEE-----------------HHHHHHHHH-------HHHHHHHHHHHH------G
280 residues (78.43%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 44.95% helical, 13.24% extended, 41.81% loops/other (query: 49.58% 5.88% 44.54%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2QP9_X not_found 58.58.58.58 NONE -93.693 0 1 77.03% 40.73% OPTM -1283.530 -733.460 10.036 0.581 0.769 0.892 0.933 72.160 -106.1 14.410 395.000 -375.0 36.950 604.000 -698.5 0.880 4.130 14.7 2.030 6.340 -63.1 2.440 15.560 49.4 23.920 89.060 -119.6 4.730 20.690 -8.2 29.280 65.970 -138.1 -30.000 9.000 -126.0 -30.000 28.000 -186.0 30.590 789.000 -667.0 113.820 875.000 -942.0 -1.800 -31.000 -7.0 4.470 28.000 -143.0 5.000 -1.0 -3.610 -9.3 0.000 -9.3e+061 5.000 -1.0 0.623 -63.4 0.24 0.76
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---HHHHH-HHHHHHHHHHHHHHHHH-HHHHHH------EEEEE-----HHHHHHHHHHHH----EEEE----HH-----
Query: 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG 159
Sbjct: 129 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWS- 207
------------HHHHHHHH-HHHHH--------------EEEE------HHHHHHHHHHHH--EEEEEEHHHHH----
-HHHHHHHHHHHHHH----EEEE-HHHHHH---------HHHHHHHHHHHHH----------EEEEE--------HHHHH
Query: 160 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAAR 239
Sbjct: 208 --EKLVKQLFAMARENKPSIIFIDQVDALTGS------EASRRIKTELLVQMNGVGQG----VLVLGATNIPWQLDSAIR 275
HHHHHHHHHHHHH---EEEEEE-------- -HHHHHHHHHHHHHHH---- EEEEEEE-------HHHH
HHH--EEE-----HHHHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-
Query: 240 RRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD--------- 310
Sbjct: 276 RRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTRK 355
H---EEEE-----HHHHHHHHHHHH--------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--EEEE-----
HHH---HH-H HHHHHHHHHHHHH------HHHHHHHHHHHHH--
Query: 311 ---------------IATITPDQVR--PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354
Sbjct: 356 LTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 416
EEEE------EEE-----------------HHHHHHHHHH------HHHHHHHHHHHHH--
275 residues (77.03%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 47.86% helical, 9.29% extended, 42.86% loops/other (query: 49.58% 5.88% 44.54%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
3CF0_A not_found 58.58.58.58 NONE -93.861 0 1 76.75% 38.13% OPTM -1165.844 -659.390 10.169 0.601 0.770 0.940 0.950 66.120 -104.0 17.320 477.000 -441.5 31.420 567.500 -674.5 -0.080 2.020 25.2 1.770 6.030 -54.6 14.050 75.300 -0.6 26.630 84.600 -107.7 22.290 72.050 -68.2 27.330 79.310 -151.5 -30.000 38.000 -157.0 -30.000 61.000 -215.0 26.540 700.000 -549.0 97.290 722.000 -775.0 4.030 21.000 -46.0 17.420 107.000 -227.0 5.000 -88.7 -3.292 -11.5 0.000 -9.3e+061 5.000 -85.0 0.431 -44.0 0.28 0.90
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------HHHHH-HHHHHHHHHHHHHHHHH-HHHHHH-- ----EEEEE-----HHHHHHHHHHHH----EEEE----HH-
Query: 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549
------------HHHHHHHHHHHHHHHH-HHHHHHH------EEEEE------HHHHHHHHHHH---EEEEE-HHHHHHH
-----HHHHHHHHHHHHHH----EEEE-HHHHHH--- ------HHHHHHHHHHHHH----------EEEEE-----
Query: 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR----GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231
Sbjct: 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD-RVINQILTEMDGMSTKKN--VFIIGATNRP 626
HH-----HHHHHHHHHHH---EEEEE----HHHHHH------------H HHHHHHHHHH-------E EEEEEE----
---HHHHHH HH--EEE-----HHHHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Query: 232 QEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309
Sbjct: 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705
-------------EEEE-----HHHHHHHHHHHH----- -----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
-HHH---HH-HHHHHHHHHHHHHH------HHHHHHHHHHHHH--
Query: 310 DIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354
Sbjct: 706 ---EIVPE----IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 743
----- -HHHHHHHH--------HHHHHHHHHHHHHH-Q
274 residues (76.75%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.80% helical, 10.00% extended, 49.20% loops/other (query: 49.58% 5.88% 44.54%)
SCOP classification: [Alpha and beta proteins (a/b)]/[P-loop containing nucleoside triphosphate hydrolases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1LV7_A c.37.1.20 153.53.53.29 NONE -94.161 0 1 69.19% 32.06% OPTM -876.757 -797.140 6.859 0.603 0.749 0.906 0.946 56.170 -86.6 11.730 339.500 -241.5 25.460 404.500 -497.0 1.590 7.020 41.6 2.700 14.020 -66.0 11.640 64.500 37.3 18.560 66.220 -97.4 21.650 59.150 -22.2 27.220 69.500 -132.5 -30.000 24.000 -107.0 -30.000 41.000 -188.0 19.110 481.000 -255.0 68.580 468.000 -515.0 -1.230 20.000 90.0 10.050 58.000 -147.0 5.000 -66.0 -1.536 -12.3 -75.000 390.0 5.000 -66.7 -0.569 -34.0 0.37 0.74
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------HHHHH-HHHHHHHHHHHHHHHHH-HHHHHH------EEEEE-----HHHHHHHHHHHH----EEEE----HH--
Query: 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156
Sbjct: 148 DQIKTTFADVAGCDEAKEEVAELVEY-LREP----SRFKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 222
------------HHHHHH-HHHHHHH H--- ------EEEEE------HHHHHHHHHHHH---EEEE---------
----HHHHHHHHHHHHHH----EEEE-HHHHHH------ ---HHHHHHHHHHHHH----------EEEEE-------
Query: 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233
Sbjct: 223 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDV 300
----HHHHHHHHHHHH----EEEEE--HHHH-------------HHHHHHHHHHHHHH--- ----EEEEEEE------
-HHHHHH HH--EEE-----HHHHHHHHHHHHH-------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-H
Query: 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311
Sbjct: 301 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV-- 377
-----------EEEE-----HHHHHHHHHHHH----- -----HHHHHH------HHHHHHHHHHHHHHHHH------
HH---HH-HHHHHHHHHHHHHH-----
Query: 312 ATITPDQVRPIAYIDFENAFRTVRPSV 338
Sbjct: 378 ----------VSMVEFEKAKDKIMMGL 394
-HHHHHHHHHHH----L
247 residues (69.19%) of query sequence aligned
DONE: Mon Aug 11 06:39:44 2008 EST