LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Tue Aug 12 18:15:18 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0428
--> 267 residues, sequence name: T0428
Database: T:\CBSU\blastdb\20080108\nr
PDB structure 1XQ9 with significant sequence identity (62.88%) has been detected:
pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium Falciparum At 2.6 Resolution pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium Falciparum At 2.6 Resolution
This structure may be a good candidate for homology modeling procedure
sequence_identity= 166/264 (62.88%) (length difference of 1.12%)
Query: 4 SHHHHHHSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLL 63
+HHHHHH + TY L L+RHGES WNKEN+FTGWTDV LSE+G EAI AG+ L
Sbjct: 2 AHHHHHHMT-------TYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLK 54
Query: 64 EKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASK 123
EK FKFDVVYTSVLKRAI T W VLK ++ P++ WRLNERHYG+LQGLNKSETA K
Sbjct: 55 EKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHYGSLQGLNKSETAKK 114
Query: 124 FGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPYFE 183
+GE+QVKIWRRS+D+PPP L+K D RWPG+ ++YK + LP TECLKDTVERV P++
Sbjct: 115 YGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVERVLPFWF 174
Query: 184 DVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTK 243
D IAP I++ K V+V+AHGNSLR L+ L+ ++ +LE+NIPT PLV ELD+ LK K
Sbjct: 175 DHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIK 234
Query: 244 KYYLISEEELKAKMEAVANQGKAK 267
YYL+ EELK KM+ VANQGKAK
Sbjct: 235 HYYLLDSEELKKKMDEVANQGKAK 258
-> 248 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 0 | 16 | 221 | 11 | 0 | 0 | 2 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 1.25 | 1.06 | 1.43 | 1.80 |
2 | 1.25 | 0.00 | 1.23 | 1.26 | 1.56 |
3 | 1.06 | 1.23 | 0.00 | 1.32 | 1.47 |
4 | 1.43 | 1.26 | 1.32 | 0.00 | 1.14 |
5 | 1.80 | 1.56 | 1.47 | 1.14 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.00% helical, 12.50% extended, 52.50% loops/other (query: 38.20% 10.86% 50.94%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1XQ9_A c.60.1.1 63.15.15.13 NONE -68.356 0 1 89.51% 63.18% OPTM -1073.854 -729.550 13.808 0.703 0.918 0.990 0.998 110.080 -135.0 40.490 990.500 -977.0 62.560 980.000 -1058.5 3.160 10.910 -25.0 5.360 8.050 -66.2 29.050 156.880 -132.3 49.420 152.630 -187.3 28.230 116.320 -154.7 50.690 117.400 -193.5 -30.000 52.000 -183.0 -30.000 59.000 -206.0 37.540 913.000 -819.0 108.060 837.000 -887.0 9.850 101.000 -175.0 19.450 142.000 -245.0 5.000 -1.0 -6.860 -12.5 94.000 274.0 5.000 -1.0 -0.824 -97.0 0.19 0.90
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEEEE-----------EE--------HHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------
Query: 18 GSTYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97
Sbjct: 9 MTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVP 88
---EEEEEEE---------------------HHHHHHHHHHHHHHHHH-----EEEE---HHHHHHHHHHHHHH------
EE--HHHHHHH--------HHHHHHH--HHHHHHHH-------------------------------------HHHHHHH
Query: 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177
Sbjct: 89 VVKTWRLNERHYGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVER 168
EEE----------------HHHHH------HHHHHHH------------------------------------HHHHHHH
HHHHHHHHHHHH------EEEEE--HHHHHHHHHHH---HHHHHH------EEEEEEE----------E---HHHHHHH
Query: 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLISEEELKAK 256
Sbjct: 169 VLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDENLKPIKHYYLLDSEELKKK 247
HHHHHHH-HHHHHH----EEEEE-HHHHHHHHHHH----HHHHHH--------EEEEE-----EEEEEE-----HHHH-
239 residues (89.51%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.50% helical, 10.74% extended, 48.76% loops/other (query: 38.20% 10.86% 50.94%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1YFK_A not_found 59.59.59.59 NONE -68.414 0 1 89.51% 51.46% OPTM -1105.697 -755.500 13.006 0.732 0.954 0.982 0.998 94.160 -121.0 31.360 732.000 -708.5 50.270 718.000 -828.5 0.920 5.100 -18.1 0.580 -3.810 -55.5 10.550 69.220 -43.6 40.610 104.280 -147.8 17.170 77.470 -95.3 49.100 100.780 -176.4 -30.000 66.000 -187.0 -30.000 74.000 -211.0 38.390 817.000 -738.0 114.470 809.000 -859.0 9.050 102.000 -181.0 17.880 131.000 -243.0 5.000 -1.0 -2.925 -16.7 40.000 333.0 5.000 -1.0 0.820 -73.0 0.22 0.95
alignment source: OPTM
-EEEEEEE-----------EE--------HHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------EE
Query: 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPII 99
Sbjct: 3 AYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVV 82
-EEEEEEE---------------------HHHHHHHHHHHHHHHHH-----EEEE---HHHHHHHHHHHHH-------EE
--HHHHHHH--------HHHHHHH--HHHHHHHH------------------ -------------------HHHHHHH
Query: 100 NHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWP--GNELIYKGICPSCLPTTECLKDTVER 177
Sbjct: 83 RTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIAR 162
E----------------HHHHHHHH-HHHHHHHHH---------------HHHHH------------------HHHHHHH
HHHHHHHHHHHH------EEEEE--HHHHHHHHHHH---HHHHHH------EEEEEEE--------- -E---HHHHHHH
Query: 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKK-YYLISEEELKAK 256
Sbjct: 163 ALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKA 242
HHHHHHHHHHHHHH----EEEEE-HHHHHHHHHHHH---HHHHH---------EEEEE----------EE---HHHHHHH
HH
Query: 257 ME 258
Sbjct: 243 ME 244
H-
239 residues (89.51%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.34% helical, 12.61% extended, 47.06% loops/other (query: 38.20% 10.86% 50.94%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1E59_A c.60.1.1 63.15.15.13 NONE -68.546 0 1 89.14% 56.72% OPTM -1200.458 -732.960 15.458 0.730 0.929 0.995 0.999 101.870 -128.6 33.830 794.000 -800.0 67.910 819.500 -912.0 -0.350 -11.000 -6.0 1.960 0.290 -53.7 7.380 39.600 -17.8 43.150 131.410 -159.6 14.640 67.370 -83.8 48.790 111.050 -181.0 -30.000 65.000 -180.0 -30.000 74.000 -207.0 42.860 1031.000 -927.0 181.790 983.000 -1036.0 9.090 89.000 -166.0 17.450 134.000 -236.0 5.000 -1.0 -3.423 -12.8 0.000 -9.3e+061 5.000 -1.0 0.322 -78.7 0.17 0.92
alignment source: OPTM
-EEEEEEE-----------EE--------HHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------EE
Query: 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPII 99
Sbjct: 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVE 81
-EEEEEEE----HHHH-------------HHHHHHHHHHHHHHHH------EEEE---HHHHHHHHHHHHHH------EE
--HHHHHHH--------HHHHHHH--HHHHHHHH-------------------------------------HHHHHHHHH
Query: 100 NHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVK 179
Sbjct: 82 KSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVI 161
E----------------HHHHHHHH-HHHHHHHHH------------------------------------HHHHHHHHH
HHHHHHHHHH------EEEEE--HHHHHHHHHHH---HHHHHH------EEEEEEE----------E---HHHHHHHH
Query: 180 PYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLISEEELKAKM 257
Sbjct: 162 PYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLKRYYLGNADEIAAKA 239
HHHHH-HHHHHH----EEEEE-HHHHHHHHHHH----HHHHHH--------EEEEE-----EEEEEE---HHHHHHHH
238 residues (89.14%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 37.18% helical, 9.83% extended, 52.99% loops/other (query: 38.20% 10.86% 50.94%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
4PGM_A c.60.1.1 63.15.15.13 NONE -68.578 0 1 87.27% 49.36% OPTM -1165.227 -722.130 15.539 0.703 0.944 0.990 0.999 91.180 -119.4 24.540 576.000 -612.0 51.210 682.000 -780.5 -0.280 -0.880 1.5 4.650 8.710 -67.8 6.800 36.190 -7.8 36.390 114.930 -153.2 13.050 67.980 -76.4 45.470 108.080 -179.4 -30.000 55.000 -181.0 -30.000 71.000 -211.0 41.310 1012.000 -868.0 207.510 994.000 -1044.0 10.180 98.000 -157.0 20.700 139.000 -243.0 5.000 -1.0 -2.423 -14.8 0.000 -9.3e+061 5.000 -1.0 -1.770 -65.0 0.24 0.96
alignment source: OPTM
EEEEEE-----------EE--------HHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------EE--
Query: 22 KLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINH 101
Sbjct: 2 KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRS 81
EEEEE---------------------HHHHHHHHHHHHHHHHH-----EEEE---HHHHHHHHHHHHHH------EEE--
HHHHHHH--------HHHHHHH--HHHHHHHH-------------------------------------HHHHHHHHHHH
Query: 102 WRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPY 181
Sbjct: 82 WRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPY 161
--------------HHHHHHH--HHHHHHHHH------------------------------------HHHHHHHHHHHH
HHHHHHHH------EEEEE--HHHHHHHHHHH---HHHHHH------EEEEEEE----------E---HHHHH
Query: 182 FEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLISEEELK 254
Sbjct: 162 WQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAA 234
HH-HHHHH-----EEEEE-HHHHHHHHHHHH---HHHH----------EEEE-----------EE--HHHHH-
233 residues (87.27%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.08% helical, 9.92% extended, 50.00% loops/other (query: 38.20% 10.86% 50.94%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Phosphoglycerate mutase-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1RII_A c.60.1.1 63.15.15.13 NONE -68.604 0 1 90.26% 44.21% OPTM -1197.862 -772.700 11.894 0.693 0.943 0.986 0.990 88.280 -114.7 27.560 605.000 -615.5 47.640 626.500 -704.0 2.200 8.300 -25.4 2.980 4.880 -59.7 9.490 59.830 -40.2 34.790 103.090 -136.7 15.010 78.350 -95.9 41.650 104.790 -171.1 -30.000 69.000 -189.0 -30.000 74.000 -209.0 37.610 812.000 -726.0 87.910 748.000 -798.0 8.750 96.000 -171.0 16.690 122.000 -228.0 5.000 -1.0 -0.143 -17.4 70.000 332.0 5.000 -1.0 0.000 -59.0 0.20 0.94
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEEEE-----------EE--------HHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHHH-------
Query: 18 GSTYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97
Sbjct: 2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81
----EEEEEE----HHHH-------------HHHHHHHHHHHHHHHH------EEEE---HHHHHHHHHHHHH-------
EE--HHHHHHH--------HHHHHHH--HHHHHHHH-------------------------------------HHHHHHH
Query: 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177
Sbjct: 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVAR 159
EEE----------------HHHHHHHH-HHHHHHHHH----------------------------- -----HHHHHHH
HHHHHHHHHHHH------EEEEE--HHHHHHHHHHH---HHHHHH------EEEEEEE------ ----E---HHHHHHH
Query: 178 VKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKV-TKKYYLISEEELKAK 256
Sbjct: 160 FLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAG 239
HHHHHHH-HHHHHH----EEEEE-HHHHHHHHHHH----HHHHHH--------EEEE------------EE--HHHHHHH
HHH
Query: 257 MEA 259
Sbjct: 240 AAA 242
HHH
241 residues (90.26%) of query sequence aligned
DONE: Wed Aug 13 00:21:10 2008 EST