LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Wed Aug 13 16:30:43 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0430
--> 357 residues, sequence name: T0430
Database: T:\CBSU\blastdb\20080108\nr
-> 8 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 15 | 20 | 5 | 2 | 1 | 0 | 7 | 8 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 15.92 | 14.39 | 14.62 | 11.91 |
2 | 15.92 | 0.00 | 14.01 | 16.64 | 12.54 |
3 | 14.39 | 14.01 | 0.00 | 13.88 | 13.44 |
4 | 14.62 | 16.64 | 13.88 | 0.00 | 12.41 |
5 | 11.91 | 12.54 | 13.44 | 12.41 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 21.78 | 21.78 | 18.88 | 22.37 |
2 | 21.78 | 100.00 | 20.79 | 23.43 | 19.14 |
3 | 21.78 | 20.79 | 100.00 | 20.13 | 20.79 |
4 | 18.88 | 23.43 | 20.13 | 100.00 | 18.75 |
5 | 22.37 | 19.14 | 20.79 | 18.75 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 25.41 | 24.42 | 22.71 | 26.32 |
2 | 25.41 | 100.00 | 31.02 | 27.72 | 31.35 |
3 | 24.42 | 31.02 | 100.00 | 23.10 | 31.68 |
4 | 22.71 | 27.72 | 23.10 | 100.00 | 25.33 |
5 | 26.32 | 31.35 | 31.68 | 25.33 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.91% helical, 14.55% extended, 50.55% loops/other (query: 34.45% 16.81% 48.74%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
d.144.1.7.13_A d.144.1.7 143.64.64.60 NONE -94.937 0 1 76.75% 15.74% OPTM -753.703 -581.440 1.813 0.464 0.488 0.708 0.825 29.940 -57.0 1.000 43.500 1.0 1.280 38.000 -118.5 -0.220 7.410 4.0 -0.890 1.240 -56.2 1.540 11.170 40.6 -0.650 2.540 -31.9 7.870 13.670 -25.7 7.480 13.000 -82.8 -30.000 30.000 -137.0 -30.000 32.000 -173.0 4.420 102.000 15.0 9.030 62.000 -110.0 3.380 27.000 -67.0 2.220 -8.000 -120.0 5.000 -9.1 0.242 -15.2 0.000 -9.3e+061 5.000 -9.1 -0.155 -3.5 0.29 0.95
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--HHHHHH------------------HHHHHHHHH-----EEEEEEEE-- -EEEEEEEE--------------HHHHH
Query: 15 TENLYFQSMGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADH--TPVAIKIIAIEGPDLVNGSHQKTFEEIL 92
Sbjct: 249 SDEEILEKLRSIVSVGD-------PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ--------QQPKKELII 313
-HHHHHHHHHHH----- --------EE-------EEEEEE------EEEEEEEE-- ----HHHHH
HHHHHHHHHHHHHHH-------EEEEEEEEEE-----HHHHHHHHHH------------------EEEEEEE------HH
Query: 93 PEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLE 172
Sbjct: 314 NEILVMREN---------KNPNIVNYLDSYLVG------------------------------DELWVVMEYLAGGSLTD 354
HHHHHHHH- -------EEEEEEE- -EEEEEEE------HHH
HHHH----HHHHHHHHHHHHHHHHHHHH---EEE-------EEE------EEEEE----EEEE----EEEEEE-------
Query: 173 QMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRL 252
Sbjct: 355 VVTETCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM-----------DGSVKLTDFGFCAQITPEQSKRS 422
HHHH----HHHHHHHHHHHHHHHHHHHH- -EE--------EEE-- ---EEE------EE---------
-----EEEEEE-------------HHHHHHHH-------HHH------HHHHHHHHHHHHH--- -------HHHHHHHH
Query: 253 ERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMT-FKTKCNTPAMKQIKR 331
Sbjct: 423 TMVG---------TPYWM---------APEVVTRKA------YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 478
---- ----- -HHHH---- ---HHHHHHHHHHHHHHHH---------HHHHHHHHHH
H HHHHHHHH---H HHHHHHH-HHH--
Query: 332 K--------------IQEFHRTMLNFS-----SATDLLCQHSLFK 357
Sbjct: 479 NGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELL-QHQFLK 522
H------------HHHHHHHHHH----------HHHH- ------
274 residues (76.75%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.02% helical, 16.97% extended, 48.01% loops/other (query: 34.45% 16.81% 48.74%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1HOW_A d.144.1.7 143.64.64.60 NONE -95.013 0 1 71.43% 15.84% OPTM -906.287 -530.890 1.547 0.494 0.473 0.650 0.739 19.810 -50.9 -0.340 10.500 -22.5 0.520 25.000 -116.5 -1.690 -12.140 -35.1 -1.580 -2.790 -59.0 -0.770 -3.180 5.6 -0.480 6.020 -30.2 -5.380 -14.450 -14.2 5.120 9.400 -79.3 -30.000 6.000 -119.0 -30.000 30.000 -180.0 0.850 14.000 55.0 2.550 20.000 -73.0 2.230 23.000 -110.0 4.200 18.000 -147.0 5.000 -5.2 0.889 -15.7 0.000 -9.3e+061 5.000 -5.1 -0.398 0.2 0.19 0.99
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----EEEEEEEE-- -EEEEEEEE--------------HHHHHHHHHHHHHHHHHHHH-------EEEEEEEEEE---
Query: 50 GEGVFGEVFQTIADH--TPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGS 127
Sbjct: 165 GWGHFSTVWLAKDMVNNTHVAMKIVRGD---------KVYTEAAEDEIKLLQRVNDAD---------------------- 213
E---EEEEEEEE----EEEEEEEE---H HHHHHHHHHHHHHHHHHH---
--HHHHHHHHHH------------------EEEEEEE------HHHHHH--- -HHHHHHHHHHHHHHHHHHHH---
Query: 128 YPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLS----SLATAKSILHQLTASLAVAEASLR 203
Sbjct: 214 NTKEDSMGANHILKLLDHFNHKGP----NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG 289
-HHHHHHH-------EEEEEE--- -EEEEEEE------HHHHHHH-------HHHHHHHHHHHHHHHHHHHH---E
EEE-------EEE------EEEEE----EEEE----EEEEEE------------EEEEEE-------------HHHHHHH
Query: 204 FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRL 283
Sbjct: 290 IIHTDIKPENVLMEIVDS--------------PENLIQIKIADL--------GNACWYDEHYTNSIQTREYRS---PEVL 344
E--------EEEEEEE-- --EEEEEE---- --EE----------------H HHHH
H-------HHH----- -HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH- --HHHH
Query: 284 MKKENNNRWGEYHPYS---NVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTML-------------NFSSAT 347
Sbjct: 345 LGA----------PWGCGADIWSTACLIFELITGDFLFEPDDDDHIAQIIELLGELPSYLLRNGKYTRTFFSKLKFWPLE 414
--- ---HHHHHHHHHHHHHHHH---------HHHHHHHHHHH----HHHHH----------------HHH
HHHH-
Query: 348 DLLCQ 352
Sbjct: 415 DVLTE 419
HHHH-
255 residues (71.43%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 32.00% helical, 17.45% extended, 50.55% loops/other (query: 34.45% 16.81% 48.74%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1IG1_A d.144.1.7 143.64.64.60 NONE -95.123 0 1 65.83% 15.18% OPTM -828.949 -601.660 1.403 0.304 0.404 0.689 0.742 33.360 -55.8 -0.100 15.500 34.5 -0.360 15.000 -98.0 -1.560 -1.070 21.3 -1.180 -0.270 -51.8 -0.000 6.340 62.0 -1.440 -2.570 -26.0 9.970 39.100 -18.3 8.170 15.710 -77.3 -30.000 49.000 -131.0 -30.000 36.000 -164.0 1.370 62.000 104.0 4.090 27.000 -74.0 0.520 22.000 2.0 3.440 24.000 -124.0 5.000 -4.2 0.818 -13.0 0.000 -9.3e+061 5.000 -4.2 -0.276 0.3 0.17 0.94
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----EEEEEEEE--- EEEEEEEE--------------HHHHHHHHHHHHHHHHHHHH-------EEEEEEEEEE---
Query: 50 GEGVFGEVFQTIADHT--PVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGS 127
Sbjct: 20 GSGQFAVVKKCREKSTGLQYAAKFIKKRRTK--SSRRGVSREDIEREVSILKEI---------QHPNVITLHEVYENKT- 87
E---EEEEEEEE-----EEEEEEEE------ ------HHHHHHHHHHHHH-- ------EEEEEE---E
--HHHHHHHHHH------------------EEEEEEE------HHHHHH--- -HHHHHHHHHHHHHHHHHHHH---EEE
Query: 128 YPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLS-SLATAKSILHQLTASLAVAEASLRFEH 206
Sbjct: 88 -----------------------------DVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL-QIAH 137
EEEEEE------HHHHHHHH----HHHHHHHHHHHHHHHHHHHH-- EE--
-------EEE------EEEEE----EEEE----EEEEEE------------EEEEEE-------------HHHHHHHH--
Query: 207 RDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKK 286
Sbjct: 138 FDLKPENIMLLDRNV--------------PKP--RIKIIDFGL----------AHKIDFGNEFKNIFGTPEFVAPEIVNY 191
------EEE------ --- EEE------ EE------------------HHHH---
-----HHH------HHHHHHHHHHHHH--- -------HHHHHHHHHHHHHHHHH-- -HHHHHHHH-
Query: 287 ENNNRWGEYHPYSNVLWLHYLTDKMLKQMT-FKTKCNTPAMKQIKRKIQEFHRTMLN--FSSATDLLCQ 352
Sbjct: 192 EP------LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRR 254
-- --HHHHHHHHHHHHHHHH---------HHHHHHHHH-------HHHH----HHHHHHHH--
235 residues (65.83%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.85% helical, 22.41% extended, 42.74% loops/other (query: 34.45% 16.81% 48.74%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2A19_B not_found 68.68.68.68 NONE -95.264 0 1 67.23% 11.99% OPTM -835.569 -526.420 1.705 0.387 0.399 0.646 0.832 26.280 -51.9 1.640 41.000 12.0 2.210 21.500 -147.5 -1.750 -4.150 30.6 -0.540 -4.490 -52.2 -0.340 -1.300 75.5 -0.600 1.810 -27.5 12.520 27.330 -3.0 6.180 16.260 -69.8 -30.000 50.000 -122.0 -30.000 45.000 -159.0 4.590 72.000 52.0 7.860 51.000 -111.0 1.980 37.000 25.0 2.940 11.000 -113.0 5.000 -5.0 0.707 -10.0 0.000 -9.3e+061 5.000 -6.3 0.643 -1.4 0.33 0.88
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----HHHHHH------------------HHHHHHHHH-----EEEEEEEE-- -EEEEEEEE--------------HH
Query: 12 DLGTENLYFQSMGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADH--TPVAIKIIAIEGPDLVNGSHQKTFE 89
Sbjct: 256 AHTVDKRFGMDFKEIELIGSGGF--------------------GQVFKAKHRIDGKTYVIKRVKYNNEKA---------- 305
-----HHHHHHEEEEEEEE---- --EEEEEE-----EEEEEEEE------
HHHHHHHHHHHHHHHHHH-------EEEEEEEEEE-----HHHHHHHHHH------------------EEEEEEE----
Query: 90 EILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGG- 168
Sbjct: 306 --------EREVKALAKLDHVNIVHYNGCWDGFDYDRS----------------------------KTKCLFIQMEFCDK 349
HHHHHHHHH--------EEEEEEEEEE--- EEEEEEEEE-----
--HHHHHH--- -HHHHHHHHHHHHHHHHHHHH---EEE-------EEE------EEEEE----EEEE----EEEEE
Query: 169 IDLEQMRTKLS----SLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSI 244
Sbjct: 350 GTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK-KLINRDLKPSNIFLVDTK--------------------QVKI 408
--HHHHHHH-------HHHHHHHHHHHHHHHHHHHH- -EE--------EEEEE-- EEEE
E------------EEEEEE-------------HHHHHHHH-------HHH------HHHHHHHHHHHHH----------H
Query: 245 IDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTP 324
Sbjct: 409 GDFGL-----------VTSLKNDGKRRSKGT---------LRYMSPEQISSQDYGKEVDLYALGLILAELLHV---CDT- 464
----- -EE------------ -----HHHHH------HHHHHHHHHHHHHHH-- ---
HHHHHHHHHHHHHHHH-- - HHHHHHHH-H
Query: 325 AMKQIKRKIQEFHRTMLN--F-SSATDLLCQH 353
Sbjct: 465 -AFETSKFFTDLRDGIISDIFDKKEKTLLQKL 495
HHHHHHHHHHHH---------HHHHHHHHHH
240 residues (67.23%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.07% helical, 14.65% extended, 51.28% loops/other (query: 34.45% 16.81% 48.74%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1YI6_A d.144.1.7 143.64.64.60 NONE -95.275 0 1 62.46% 17.11% OPTM -615.966 -439.750 1.217 0.429 0.355 0.686 0.759 21.550 -50.5 0.170 4.500 47.5 2.650 33.000 -145.0 -0.400 0.010 26.9 -0.940 0.150 -62.0 -0.220 1.560 75.2 -0.890 -1.570 -41.2 1.360 -0.920 26.1 7.860 20.660 -81.4 -30.000 21.000 -103.0 -30.000 26.000 -160.0 2.330 84.000 98.0 7.950 50.000 -95.0 1.020 -4.000 36.0 4.180 18.000 -102.0 5.000 -8.7 -0.276 -18.3 0.000 -9.3e+061 5.000 -8.7 0.623 -3.2 0.24 0.95
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----EEEEEEEE-- -EEEEEEEE--------------HHHHHHHHHHHHHHHHHHHH-------EEEEEEEEEE----
Query: 50 GEGVFGEVFQTIADH-TPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSY 128
Sbjct: 274 GQGCFGEVWMGTWNGTTRVAIKTLK---PGTM------SPEAFLQEAQVMKKL---------RHEKLVQ---LYAVVSEE 332
E----EEEEEEE---EEEEEE---- ---- HHHH-HHHHHHHH-- ------E EE------
-HHHHHHHHHH------------------EEEEEEE------HHHHHH---- HHHHHHHHHHHHHHHHHHHH---EE
Query: 129 PPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSS---LATAKSILHQLTASLAVAEASLRFE 205
Sbjct: 333 P-----------------------------IIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYV 382
- -EEE----EEHHHHHH--------HHHHHHHHHHHHHHHHHHHH-- EE-
E-------EEE------EEEEE----EEEE----EEEEEE------------EEEEEE-------------HHHHHHHH-
Query: 206 HRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMK 285
Sbjct: 383 HRDLRAANILVGE--------------------NLVCKVADFGLARLIEDN-------ETARQGAKFPIKWTAPEAALYG 435
-------EEE--- --EEE------EE----- --------------HHHHHH--
------HHH------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-- -HHHHHHHH-H
Query: 286 KENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLN---FSSATDLLCQH 353
Sbjct: 436 R--------FTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVERGYRMPCPPECPESLHDLMCQC 496
- -HHHHHHHHHHHHHHHH-----------HH HHHHHHH------------HHHHHHHHHH-
223 residues (62.46%) of query sequence aligned
DONE: Thu Aug 14 01:20:04 2008 EST