LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sat Aug 16 21:20:54 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0440
--> 275 residues, sequence name: T0440
Database: T:\CBSU\blastdb\20080108\nr
-> 6 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 73 | 19 | 6 | 0 | 0 | 0 | 1 | 6 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 11.85 | 12.06 | 10.03 | 11.06 |
2 | 11.85 | 0.00 | 5.39 | 11.60 | 8.88 |
3 | 12.06 | 5.39 | 0.00 | 11.64 | 9.19 |
4 | 10.03 | 11.60 | 11.64 | 0.00 | 13.10 |
5 | 11.06 | 8.88 | 9.19 | 13.10 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 11.36 | 11.74 | 9.13 | 12.27 |
2 | 11.36 | 100.00 | 32.20 | 9.65 | 15.33 |
3 | 11.74 | 32.20 | 100.00 | 8.11 | 11.88 |
4 | 9.13 | 9.65 | 8.11 | 100.00 | 11.41 |
5 | 12.27 | 15.33 | 11.88 | 11.41 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 26.52 | 17.05 | 41.06 | 45.35 |
2 | 26.52 | 100.00 | 100.00 | 21.24 | 46.36 |
3 | 17.05 | 100.00 | 100.00 | 22.78 | 35.63 |
4 | 41.06 | 21.24 | 22.78 | 100.00 | 44.49 |
5 | 45.35 | 46.36 | 35.63 | 44.49 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.12% helical, 14.05% extended, 50.83% loops/other (query: 41.82% 12.73% 45.45%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2YXO_A not_found 55.55.55.55 NONE -71.921 0 1 86.91% 26.10% OPTM -1000.480 -726.730 7.162 0.500 0.815 0.872 0.902 51.540 -83.5 9.550 215.000 -260.0 17.040 248.000 -348.5 -0.820 -1.460 -12.3 -0.610 -7.440 -45.8 1.120 11.040 9.6 -0.120 3.750 -31.6 4.380 31.730 -45.5 10.520 24.850 -75.1 -30.000 54.000 -167.0 -30.000 56.000 -186.0 23.590 555.000 -520.0 59.640 565.000 -625.0 6.270 86.000 -142.0 12.430 83.000 -183.0 5.000 -61.0 -1.710 -25.3 0.000 -9.3e+061 5.000 -61.1 -0.201 -17.2 0.61 0.84
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---------------HHHHHHHHHHH----EEEEE--------------------------HHHHHHHHHHHHHHHHHH-
Query: 4 DGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYA 83
Sbjct: 3 DSHVHTPLCGHAEGHP-EAYLEEARAKGLKGVVFTDHSPMPPWY------DPE----SRMRLEALPFYLLALERVRERAQ 71
EEE-----------HH HHHHHHHH----EEEEEEE-------- --- ------HHHHHHHHHHHHHH---
---EEEEEEEEE-----HHHHHHHHHHH----EEEEEEEEE-------------HHHHHHHHHHHH--HHHHHHHHHHHH
Query: 84 SDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGV 163
Sbjct: 72 -DLYVGIGLEADFHPGTEGFLAQLLRRY--PFDYVIGSVHYL-GAWPLDHPD-HQEEYA------WRDLKEVFRAYFQEV 140
-EEEEEEEEE-----HHHHHHHHH--- ---EEEE----- --------- ------ --HHHHHHHHHHHHH
HHHHHH-------EEEE---HHHH------------HHHHHHHHHHHHHHHHH---EEEE---------------HHHHH
Query: 164 KQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIV 243
Sbjct: 141 EKAARS--GLFH--AIGHLDLPKKFGHRLP------EEALLELAEPALRAVAEAGLFLDVNTAGLRRPA-KEVYPAPALL 209
HHH--- ---E E--------------H HHHHHHHHHHHHHHHHH--EEEEE--------- -----HHHHH
HHHHH---EEEE------HHHHHHHHHHHHHH
Query: 244 TLASELQIPFVYGSDSHGVQDIGRGYSTYCQK 275
Sbjct: 210 RRARELGIGLVLGSDAHRPEEVGFAFPEVQAL 241
HHHHH---EEEE------------HHHHHHHH
239 residues (86.91%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 32.27% helical, 17.73% extended, 50.00% loops/other (query: 41.82% 12.73% 45.45%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1TQX_A c.1.2.2 188.44.3.3 NONE -72.828 0 1 77.09% 11.36% OPTM -680.810 -500.610 1.372 0.331 0.507 0.735 0.872 14.600 -39.9 1.180 63.500 15.5 0.560 9.000 -85.5 0.740 4.740 17.3 0.190 2.550 -48.6 0.310 -0.760 59.4 -0.590 -1.140 -26.6 5.720 18.390 2.7 7.060 8.200 -58.8 -30.000 34.000 -110.0 -30.000 18.000 -125.0 1.100 45.000 83.0 0.490 2.000 -47.0 4.970 18.000 -56.0 4.860 17.000 -124.0 5.000 -0.3 -0.178 -21.7 49.000 210.0 5.000 -0.3 -0.041 -0.2 0.09 0.71
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-------HHHHHHHHHHH----EEEEE--------------------------HHHHHHHHHHHHHHHHHH----EEEEE
Query: 12 CPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIG 91
Sbjct: 12 VLASNISKLAEETQRMESLGA-EWIHLDVMDMH--FVPNLSFG-----------------PPVINNLKK-YTKSIFFDVH 70
-------HHHHHHHHHH---- EEEEEEE---- -------H HHHHHH--- ----EEEEEE
EEEE-----HHHHHHHHHHH---- EEEEEEEEE-------------HHHHHHHHHHHH-- HHHHHHHH
Query: 92 FEVDYLIGYEDFTRDFLNEYGPQT-DDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGG-----------FEQAQLAY 159
Sbjct: 71 LMVEY-----------PEKYVPLLKTSNQLTFHFEALNE-------DTERCIQLAKEIRDNNLWCGISIKPKTD------ 126
E---- -----------EEEEE------- HHHHHHHHHHHH----EEEEEE------
HHHHHHHHHH-------EEEE---HHHH------------HHHHHHHHHHHHHHHHH---EEEE---------------H
Query: 160 LEGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPP 239
Sbjct: 127 VQKLVPILDTN--LINTVLVMTV------EPGFGGQS--FMHDMMGKVSFLRKKYK--NLNIQVDGG----------LNI 184
---HHHH---- --EEEEE--- -------- ----HHHHHHHHHH--- -EEEEE--- -HH
HHHHHHHHH---EEEE-- ----HHHHHHHHHHHHHH
Query: 240 KKIVTLASELQIPFVYGS---DSHGVQDIGRGYSTYCQK 275
Sbjct: 185 ETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQK 223
HHHHHHHH---EEEE-HHHH----HHHHHHHHHHHHHH-
212 residues (77.09%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 34.40% helical, 17.89% extended, 47.71% loops/other (query: 41.82% 12.73% 45.45%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1H1Y_A c.1.2.2 188.44.3.3 NONE -73.013 0 1 76.73% 9.47% OPTM -655.517 -456.830 1.167 0.380 0.431 0.727 0.869 16.050 -40.5 1.370 72.500 15.0 1.950 24.500 -106.5 1.960 11.850 9.4 -0.020 -2.600 -38.8 1.440 9.500 49.5 -0.840 -4.710 -21.7 6.180 14.830 1.9 6.220 9.980 -55.0 -30.000 38.000 -115.0 -30.000 11.000 -119.0 1.080 66.000 83.0 0.330 -6.000 -45.0 3.370 8.000 -30.0 3.750 15.000 -106.0 5.000 -2.7 -0.094 -28.6 -24.000 294.0 5.000 -2.7 0.653 -1.2 0.06 0.75
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-------HHHHHHHHHHH----EEEEE--------------------------HHHHHHHHHHHHHHHHHH----EEEEE
Query: 12 CPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIG 91
Sbjct: 12 MLSSDFANLAAEADRMVRLGADWLHMDIMDGH---FVPNLTIG-----------------APVIQSLRK--HTKAYLDCH 69
-------HHHHHHHHHH----EEEEEEE---- -------H HHHHHHH-- ---EEEEEE
EEEE-----HHHHHHHHHHH----EEEEEEEEE-------------HHHHHHHHHHH H--HHHHHHHHHHH
Query: 92 FEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQF---------YGGFEQAQLAYLEG 162
Sbjct: 70 LMVT---NPSDYVEPLAKAGAS-----GFTFHIEVSRD-------NWQELIQSIKAKGMRPGVSLRPGTP-------VEE 127
E--- ----HHHHHHH---E EEEE------- HHHHHHHHHH---EEEEEE------ ---
HHHHHHH-------EEEE---HHHH------------HHHHHHHHHHHHHHHHH---EEEE---------------HHHH
Query: 163 VKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKI 242
Sbjct: 128 VFPLVEAE-NPVELVLVMTV------EPGFGG--QKFMPEMMEKVRALRKKYP--SLDIEVDGG-----LGPST------ 185
HHHHH--- ---EEEEE--- ------ ------HHHHHHHHHH--- -EEEEE--- ----H
HHHHHH---EEEE-- ----HHHHHHHHHHHHHH
Query: 243 VTLASELQIPFVYGS----DSHGVQDIGRGYSTYCQK 275
Sbjct: 186 IDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG 222
HHHHHH---EEEE-HHHH----HHHHHHHHHHHHHH-
211 residues (76.73%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 43.65% helical, 14.21% extended, 42.13% loops/other (query: 41.82% 12.73% 45.45%)
SCOP classification: [Alpha and beta proteins (a/b)]/[TIM beta/alpha-barrel]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1J2W_A c.1.10.1 188.44.7.7 NONE -73.019 0 1 68.36% 11.03% OPTM -535.057 -488.370 1.184 0.412 0.357 0.689 0.851 14.310 -42.0 0.650 34.500 57.5 0.380 3.000 -77.5 2.750 21.200 7.9 1.940 11.820 -52.0 2.890 21.870 50.0 -0.040 0.490 -26.6 3.470 -2.020 20.9 6.440 7.590 -55.5 -30.000 20.000 -101.0 -30.000 1.000 -125.0 1.870 71.000 109.0 2.460 18.000 -52.0 2.350 28.000 -25.0 4.840 20.000 -129.0 5.000 -0.1 -2.534 -21.9 0.000 -9.3e+061 5.000 -0.1 0.756 -0.6 0.25 0.93
alignment source: OPTM
-----------HHHHHHHHHHH----EEEEE--------------------------HHHHHHHHHHHHHHHHHH----E
Query: 8 HTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLL 87
Sbjct: 9 HTLLKPTATLEEVAKAAEEALEYGF--YGLCIPP-------------------------------SYVAWVRARYP-HAP 54
E-------HHHHHHHHHHHHHH--- EEE---- -HHHHHHH--- ---
EEEEEEEE----- HHHHHHHHHHH----EEEEEEEEE-------------HHHHHHHHHHHH--HHHHHHHHHHHHH
Query: 88 IHIGFEVDYLIGY---EDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVK 164
Sbjct: 55 FRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLH---------------------LGRAKAG----DLDYLEAEV 109
EEEEEE--------HHHHHHHHHHHHH----EEEEE--H HHHH--- HHHHHHHHH
HHHHH-------EEEE---HHHH------------HHHHHHHHHHHHHHHHH---EEEE---------------HHHHHH
Query: 165 QSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVT 244
Sbjct: 110 RAVREAVPQAVLKVILET-------GYFS----------PEEIARLAEAAIRGGADFLKTSTG-FGPR-GASLEDVALLV 170
HHHHH----EEEEE---- ---H HHHHHHHHHHHH----EEE----- ---- --HHHHHHHHH
HHHH---EEEE------HHHHHHHHH
Query: 245 LASELQIPFVYGSDSHGVQDIGRGYS 270
Sbjct: 171 RVAQGRAQVKAAGGIRDRETALRMLK 196
HH----EEEEE-----HHHHHHHHH-
188 residues (68.36%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 44.21% helical, 13.64% extended, 42.15% loops/other (query: 41.82% 12.73% 45.45%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
3CJP_A not_found 55.55.55.55 NONE -73.333 0 1 87.64% 15.07% OPTM -600.469 -560.310 2.167 0.417 0.583 0.804 0.834 18.190 -52.4 3.680 102.000 -103.0 3.460 39.000 -130.5 1.350 -6.400 -17.9 0.260 -3.900 -51.9 2.530 -2.920 6.7 0.170 -2.870 -31.6 5.180 16.020 -43.5 9.320 12.450 -75.3 -30.000 40.000 -155.0 -30.000 25.000 -161.0 2.610 60.500 -22.0 2.500 19.000 -80.0 5.100 16.000 -132.0 6.430 35.000 -155.0 5.000 -0.8 -2.814 -17.8 0.000 -9.3e+061 5.000 -0.8 0.279 -0.4 0.77 0.93
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
------------------HHHHHHHHHHH----EEEEE----------- ---------------HHHHHHHH
Query: 1 MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMK--------NTAGDKEAVTTASMAMSDLPYYF 72
Sbjct: 3 LIIDGHTHVIL-P------VEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSM-IDVRRNSI 74
--EEEEEE--- - HHHHHHHHHHH---EEEEE-----------HHHHHHHHHHHHHHH------- HHHHHHHH
HHHHHHHHHH----EEEEEEEEE-----HHHHHHHHHHH---- EEEEEEEEE-------------HHHHHHHHHHHH--
Query: 73 KKMNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQT-DDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGG 151
Sbjct: 75 KELTNVIQAYPSR---YVGFGNVPVGLSENDTNSYIEENIVNNKLVGIGELTPASGQ--IKSL----KPIFKYSMDSGSL 145
HHHHHHHHH---- EEEEE-------HHHHHHHHHHH-------EEEEE------ ---- HHHHHHHHH----
HHHHHHHHHHHHHHHHHH-------EEEE---HHHH------------HHHHHHHHHHHHHHHHH---EEEE--
Query: 152 ------FEQAQLAYLEGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNT 225
Sbjct: 146 PIWIHAFNPLVLQDIKEIAELCKAFPKV--PVILGHMG--------------------GSNWMTAVELAKEIQNLYLDTS 203
-EEE-------HHHHHHHHHHHHH---- -EEE---- ---HHHHHHHHHH---EEEE--
-------------HHHHHHHHHH---EEEE----- -HHHHHHHHHHH
Query: 226 AGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSH--GVQDIGRGYSTY 272
Sbjct: 204 A---------YFSTFVLKIVINELPLKCIFGTDMPFGDLQLSIEAIKKM 243
- ---HHHHHHHHHH----EE---------HHHHHHHHHHH
241 residues (87.64%) of query sequence aligned
DONE: Sun Aug 17 04:52:07 2008 EST