LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jun 14 2008 10:29:14)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Wed Jun 18 18:27:17 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0441
--> 342 residues, sequence name: T0441
Database: T:\CBSU\blastdb\20080108\nr
-> 23 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 18 | 192 | 21 | 1 | 1 | 0 | 3 | 2 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 2.27 | 2.00 | 2.71 | 2.61 |
2 | 2.27 | 0.00 | 1.97 | 2.37 | 2.28 |
3 | 2.00 | 1.97 | 0.00 | 2.16 | 2.02 |
4 | 2.71 | 2.37 | 2.16 | 0.00 | 0.61 |
5 | 2.61 | 2.28 | 2.02 | 0.61 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 41.11% helical, 17.41% extended, 41.48% loops/other (query: 43.86% 16.67% 39.47%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2O20_A not_found 16.16.16.16 NONE -88.815 0 1 79.24% 25.00% OPTM -1276.732 -784.780 8.342 0.685 0.879 0.990 0.994 72.000 -113.8 11.130 215.000 -159.0 20.910 277.000 -374.5 6.720 31.670 0.3 5.120 14.410 -75.9 16.200 80.810 -8.5 14.770 50.710 -94.8 31.830 80.550 -91.1 40.340 79.120 -167.4 -30.000 35.000 -182.0 -30.000 72.000 -250.0 14.950 362.000 -217.0 45.590 393.000 -439.0 4.890 72.000 -75.0 21.360 120.000 -260.0 5.000 -75.4 -1.833 -10.7 0.000 -9.3e+061 5.000 -1.0 0.000 -36.7 0.19 0.93
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEEE-----HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHHHHH----EEEEE-----HHHHHHHHH-
Query: 69 ESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS 148
Sbjct: 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNS 141
---EEEEEE-----HHHHHHHHHHHHHHHH---EEEEEE----HHHHHHHHHHHHH----EEEE------HHHHHHHHHH
---EEEEE---------EEEE-HHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHHHHH--------EEE--
Query: 149 NTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE 228
Sbjct: 142 RTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG 221
---EEEE----------EEE--HHHHHHHHHHHHHH-----EEEE------HHHHHHHHHHHHHHHH---------EE--
---HHHHHHHHHHHHH------EEEE--HHHHHHHHHHHHH--------EEEEE---HHHHHH-----EEE---HHHHHH
Query: 229 APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGT 308
Sbjct: 222 NYSYEQGKALAERLLERG--ATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGA 299
---HHHHHHHHHHHHH-- --EEEE--HHHHHHHHHHHHH---------EEEE--------------EEEE--HHHHHH
HHHHHHHHHH---- ----EEE--EEEEE----
Query: 309 KAAEKLLHAIKGEP-EERPTSMGFKLKRRASTA 340
Sbjct: 300 VAMRLLTKLMLKEDVEQNQLVLDHEIFSRRSTK 332
HHHHHHHHHH--------EEE---EEE------
271 residues (79.24%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.23% helical, 18.05% extended, 41.73% loops/other (query: 43.86% 16.67% 39.47%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
3C3K_A not_found 16.16.16.16 NONE -88.920 0 1 78.07% 18.01% OPTM -1253.260 -710.130 7.499 0.679 0.881 0.971 0.989 61.170 -103.4 4.020 79.000 -23.5 9.940 122.000 -231.0 1.610 11.180 24.7 4.420 9.460 -67.3 5.990 35.660 41.9 13.090 36.800 -79.6 18.510 52.900 -51.2 37.370 68.990 -157.2 -30.000 31.000 -170.0 -30.000 58.000 -238.0 14.250 353.000 -188.0 51.450 372.000 -415.0 4.680 92.000 -71.0 18.870 97.000 -244.0 5.000 -58.7 -0.085 -15.7 0.000 -9.3e+061 5.000 -61.0 0.623 -11.7 0.20 0.90
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---EEEEEE-----HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHHHHH----EEEEE-- ---HHHHHHHHH
Query: 69 ESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS-EHSQRTHQLLEA 147
Sbjct: 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNIIGA 86
---EEEEEE-----HHHHHHHHHHHHHHHH---EEEEEE----HHHHHHH-HHHH-----EEEE------HHHHHHHH--
----EEEEE---------EEEE-HHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHHHHH--------EEE-
Query: 148 SNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTH 227
Sbjct: 87 --FPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RISYA 163
--EEEE----------EEE--HHHHHHHHHHHHHH-----EEEEE-----HHHHHHHHHHHHHHHHH----- EEEE-
----HHHHHHHHHHHHH------EEEE--HHHHHHHHHHHHH--------EEEEE---HHHHHH-----EEE---HHHHH
Query: 228 EAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMG 307
Sbjct: 164 ENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGVDISQITVPALTTVQQPSEQIG 243
----HHHHHHHHHHHH-------EEEE--HHHHHHHHHHHHH---------EEE----------------EEE--HHHHH
HHHHHHHHHHH--------EEE--EEEEE----
Query: 308 TKAAEKLLHAIKGEPEERPTSMGFKLKRRASTA 340
Sbjct: 244 MKAVSLLLEQIHSDV---HHLLPWKFVRRQSSE 273
HHHHHHHHHHH---- EEE---EEE------
267 residues (78.07%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 39.78% helical, 19.34% extended, 40.88% loops/other (query: 43.86% 16.67% 39.47%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Periplasmic binding protein-like I]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1SXG_A c.93.1.1 20.9.9.9 NONE -88.941 0 1 79.82% 21.25% OPTM -1240.562 -663.210 8.863 0.676 0.909 0.989 0.996 66.050 -110.9 6.530 145.000 -113.5 15.380 215.500 -310.0 7.500 25.540 -6.2 6.730 21.170 -81.8 15.520 68.800 -5.8 16.540 52.680 -96.0 28.200 74.140 -91.3 38.620 75.240 -166.4 -30.000 33.000 -182.0 -30.000 68.000 -249.0 18.160 412.000 -275.0 60.230 448.000 -494.0 4.660 78.000 -108.0 22.970 143.000 -297.0 5.000 -85.5 -1.715 -12.6 -35.000 546.0 5.000 -88.0 0.613 -19.1 0.18 0.86
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----EEEEEE-----HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHHHHH----EEEEE-----HHHHHHHHH
Query: 68 AESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEA 147
Sbjct: 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK 137
----EEEEEE-----HHHHHHHHHHHHHHHHH--EEEEEE----HHHHHHHHHHHHH----EEEE------HHHHHHHHH
----EEEEE---------EEEE-HHHHHHHHHHHHHHH---EEEEEE-----HHHHH HHHHHHHHHHH--------EEE
Query: 148 SNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQR-QLHGWQSAMIENYLTPDHFLTT 226
Sbjct: 138 SPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIV 217
----EEEE----------EEEE-HHHHHHHHHHHHH------EEEEE-----HHHH--HHHHHHHHHHH---------EE
-----HHHHHHHHHHHHH------EEEE--HHHHHHHHHHHHH--------EEEEE---HHHHHH-----EEE---HHHH
Query: 227 HEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERM 306
Sbjct: 218 EGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDI 297
E----HHHHHHHHHHHH-------EEEE--HHHHHHHHHHHHHH--------EEEEEE------------EEEE--HHHH
HHHHHHHHHHHH---- ----EEE--EEEEE----
Query: 307 GTKAAEKLLHAIKGEP-EERPTSMGFKLKRRASTA 340
Sbjct: 298 GAVAMRLLTKYMNKETVDSSIVQLPHRIEFRQSTK 332
HHHHHHHHHHHH--------EEEE--EEE------
273 residues (79.82%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.67% helical, 19.78% extended, 39.55% loops/other (query: 43.86% 16.67% 39.47%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Periplasmic binding protein-like I]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.93.1.1.2_A c.93.1.1 20.9.9.9 NONE -88.999 0 1 78.65% 17.04% OPTM -1289.652 -725.190 7.702 0.656 0.798 0.987 0.991 64.040 -104.4 4.570 94.000 -45.0 9.930 152.000 -239.5 5.580 21.410 8.6 4.290 12.280 -75.1 11.820 64.360 20.9 11.610 43.820 -83.0 30.270 74.100 -72.3 35.090 68.870 -160.7 -30.000 31.000 -176.0 -30.000 63.000 -245.0 13.800 320.000 -198.0 46.660 375.000 -427.0 4.970 89.000 -65.0 20.090 120.000 -246.0 5.000 -49.7 0.926 -15.1 -84.000 586.0 5.000 -49.7 -0.328 -10.3 0.15 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEEE-----HHHHHHHHHHHHHHHH---EEEEE----- HHHHHHHHHHHHH----EEEEE-----HHHHHHHHH-
Query: 70 SYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYS-IEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS 148
Sbjct: 61 SLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAAC 140
--EEEEEE-----HHHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHH----EEEEE----HHHHHHHHHH-
---EEEEE---------EEEE-HHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHHHHH--------EEE--
Query: 149 NTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE 228
Sbjct: 141 TNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP--IAEREG 218
----EEE----------EEEE-HHHHHHHHHHHHHH-----EEEEE-----HHHHHHHHHHHHHHH------ -EEEE-
---HHHHHHHHHHHHH------EEEE--HHHHHHHHHHHHH--------EEEEE---HHHHHH-----EEE---HHHHHH
Query: 229 APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGT 308
Sbjct: 219 DWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQ 298
---HHHHHHHHHHHHH------EEEE--HHHHHHHHHHHH----------EEEEEE-------------EEE--HHHHHH
HHHHHHHHHH--------EEE--EEEEE---
Query: 309 KAAEKLLHAIKGEPEERPTSMGFKLKRRAST 339
Sbjct: 299 TSVDRLLQLSQGQAVKGNQLLPVSLVKRKTT 329
HHHHHHHHHH-------EEEE--EEE-----
269 residues (78.65%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 43.43% helical, 16.21% extended, 40.37% loops/other (query: 43.86% 16.67% 39.47%)
SCOP classification: [All alpha proteins]/[lambda repressor-like DNA-binding domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1EFA_A a.35.1.5 10.7.7.7 NONE -89.215 0 1 95.91% 22.49% OPTM -1422.247 -794.070 10.763 0.626 0.769 0.976 0.979 79.400 -124.8 10.480 308.000 -352.0 15.390 280.500 -395.5 7.180 45.500 -62.6 7.070 24.480 -87.3 15.010 103.230 -84.9 18.770 74.010 -113.2 32.250 113.300 -178.0 39.010 98.650 -199.2 -30.000 90.000 -284.0 -30.000 83.000 -294.0 29.640 670.000 -585.0 66.360 578.000 -643.0 10.830 157.000 -214.0 19.420 122.000 -249.0 5.000 -76.2 0.694 -13.6 0.000 -9.3e+061 5.000 -76.2 -0.229 -24.5 0.03 0.98
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----HHHHHHH----HHHHHEEE-------HHHHHHHHHHHHH-----HHHHHHHH-----EEEEEE-----HHHHHHHH
Query: 11 GNVTLADVAKQAGVGTMTVSRALRTPELVSDKLREKIQQVVDELGYIPNKAAGALASAESYSIALIIPSLFEKACAHFLP 90
Sbjct: 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVA 81
----HHHHHH-----HHHHHHHH--------HHHHHHHHHHHHH-----HHHHHH------EEEEEE-----HHHHHHHH
HHHHHHHH---EEEEE----- HHHHHHHHHHHHH----EEEEE-----HHHHHHHHH----EEEEE---------EEEE
Query: 91 SFQQALNKAGYQLLLGYSDYS-IEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGV 169
Sbjct: 82 AIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIF 161
HHHHHHHH---EEEEEE-----HHHHHHHHHHHHH----EEEEE----HHHHHHHHHH-----EEE----------EEEE
-HHHHHHHHHHHHHHH---EEEEEE-----HHHHHHHHHHHHHHHH--------EEE-----HHHHHHHHHHHHH-----
Query: 170 DHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSL 249
Sbjct: 162 SHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP--IAEREGDWSAMSGFQQTMQMLNEGIVP 239
-HHHHHHHHHHHHHH-----EEEEE-----HHHHHHHHHHHHHHH------ -EEEE----HHHHHHHHHHHHH-----
-EEEE--HHHHHHHHHHHHH--------EEEEE---HHHHHH-----EEE---HHHHHHHHHHHHHHHH--------EEE
Query: 250 NALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGEPEERPTSM 329
Sbjct: 240 TAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLL 319
-EEEE--HHHHHHHHHHHH----------EEEEEE-------------EEE--HHHHHHHHHHHHHHHH-------EEEE
--EEEEE---
Query: 330 GFKLKRRAST 339
Sbjct: 320 PVSLVKRKTT 329
--EEE-----
328 residues (95.91%) of query sequence aligned
DONE: Thu Jun 19 04:21:47 2008 EST