LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sun Aug 17 07:02:03 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0442
--> 269 residues, sequence name: T0442
Database: T:\CBSU\blastdb\20080108\nr
PDB structure 2PIF with significant sequence identity (77.56%) has been detected:
pdb|2PIF|A Chain A, Crystal Structure Of Upf0317 Protein Pspto_5379 From Pseudomonas Syringae Pv. Tomato. Northeast Structural Genomics Target Psr181 pdb|2PIF|B Chain B, Crystal Structure Of Upf0317 Protein Pspto_5379 From Pseudomonas Syringae Pv. Tomato. Northeast Structural Genomics Target Psr181
This structure may be a good candidate for homology modeling procedure
sequence_identity= 197/254 (77.56%) (length difference of 5.58%)
Query: 15 AARKARATYRDGLVAPTSGIAPGFTQANMIVLPRDWAFDFLLYAQRNPKPCPVLDVSDPG 74
AAR+AR TYR+GLV PT+G+APG TQAN+I LPRDWA+DFLLYAQRNPK CP+LDVSD G
Sbjct: 14 AAREARGTYRNGLVTPTAGVAPGXTQANLIALPRDWAYDFLLYAQRNPKACPILDVSDAG 73
Query: 75 SPTTLLAPGADLRTDLPLYRIWRDGKLAEETADATSAWAERDDLVAFLIGCSFTFETPMV 134
SPTTLLA G+DLRTD+P YRIWRDGKLAEE +DAT AWAE DD VAFLIGCSFTFETP+
Sbjct: 74 SPTTLLAEGSDLRTDIPXYRIWRDGKLAEEVSDATQAWAEHDDXVAFLIGCSFTFETPLQ 133
Query: 135 EAGIEIRHMTDKSNVPMYLTNRPCRPAGRLKGNMVVSMRPIPASRVADAATISGRFPAVH 194
EAGIE+RH+TD NVP Y TNR CRPAGRL G VVS RPIPA RVA+A+ ISGR+P+VH
Sbjct: 134 EAGIEVRHITDGCNVPXYRTNRACRPAGRLHGEXVVSXRPIPADRVAEASAISGRYPSVH 193
Query: 195 GAPVHVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWACGVTPQAAVMASGVPFAITHAP 254
GAPVH+G P ++GI+DLS+PDFGDAV I+PGEVPVFWACGVTPQAAV ASGVPFAITH+P
Sbjct: 194 GAPVHIGEPGRLGINDLSRPDFGDAVSIKPGEVPVFWACGVTPQAAVXASGVPFAITHSP 253
Query: 255 GHMFITDIPDTAYH 268
G+ FITD+PD+ YH
Sbjct: 254 GYXFITDVPDSTYH 267
-> 121 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 29 | 45 | 55 | 14 | 7 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 13.00 | 18.20 | 14.90 | 17.38 |
2 | 13.00 | 0.00 | 19.73 | 16.73 | 18.61 |
3 | 18.20 | 19.73 | 0.00 | 13.82 | 11.59 |
4 | 14.90 | 16.73 | 13.82 | 0.00 | 14.91 |
5 | 17.38 | 18.61 | 11.59 | 14.91 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 14.92 | 11.81 | 13.66 | 12.32 |
2 | 14.92 | 100.00 | 11.20 | 11.71 | 12.81 |
3 | 11.81 | 11.20 | 100.00 | 11.22 | 16.75 |
4 | 13.66 | 11.71 | 11.22 | 100.00 | 14.51 |
5 | 12.32 | 12.81 | 16.75 | 14.51 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 25.40 | 16.46 | 23.90 | 18.23 |
2 | 25.40 | 100.00 | 16.18 | 19.02 | 16.26 |
3 | 16.46 | 16.18 | 100.00 | 19.51 | 37.93 |
4 | 23.90 | 19.02 | 19.51 | 100.00 | 28.50 |
5 | 18.23 | 16.26 | 37.93 | 28.50 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 18.93% helical, 14.40% extended, 66.67% loops/other (query: 25.65% 19.70% 54.65%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2PIF_A not_found 43.43.43.43 NONE -70.126 0 1 87.73% 75.81% OPTM -731.495 -770.190 13.696 0.729 0.842 0.950 0.965 98.780 -124.9 49.120 1215.000 -1269.0 79.190 1185.000 -1320.0 0.690 7.220 -16.4 -0.280 -3.370 -50.4 20.750 113.550 -85.7 33.730 123.940 -149.8 22.410 87.730 -105.5 32.820 86.820 -147.5 -30.000 82.000 -180.0 -30.000 47.000 -186.0 47.670 1088.000 -1023.0 143.070 1012.000 -1065.0 7.970 83.000 -116.0 10.470 52.000 -155.0 5.000 -1.0 -12.942 -8.7 0.000 -9.3e+061 5.000 -1.0 0.146 -1.0 0.24 0.76
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHH--------------EEEEEEE-HHHHHHHHHHHH------EEEEE---------------------EEEE
Query: 16 ARKARATYRDGLVAPTSGIAPGFTQANMIVLPRDWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRTDLPLYRI 95
Sbjct: 15 AREARGTYRNGLVTPTAGVAPG-TQANLIALPRDWAYDFLLYAQRNPKACPILDVSDAGSPTTLLAEGSDLRTDIP-YRI 92
HHHHHHHH-------------- --EEEE--HHHHHHHHHHHHH------EEEE---------------------- EEE
EE--EEE--HHHHHHHHHH----EEEEE-----HHHHHHH---------------EEEE-------------EEEEE---
Query: 96 WRDGKLAEETADATSAWAERDDLVAFLIGCSFTFETPMVEAGIEIRHMTDKSNVPMYLTNRPCRPAGRLKGNMVVSMRPI 175
Sbjct: 93 WRDGKLAEEVSDATQAWAEHDD-VAFLIGCSFTFETPLQEAGIEVRHITDGCNVP-YRTNRACRPAGRLHGE--VVSRPI 168
E--EEEEE-------------- EEEE------HHHHHHH----HHHH------- ---------------- ---EEE
-HHHHHHHHHHHH---------EE---HHH--HHH---------EEE----EEEEE-----HHHHHHH----EEEE----
Query: 176 PASRVADAATISGRFPAVHGAPVHVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWACGVTPQAAVMASGVPFAITHAPG 255
Sbjct: 169 PADRVAEASAISGR----HGAPVHIGEPGRLGINDLSRPDFGDAVSIKPGEVPVFWACGVTPQAAVA-SGVPFAITHSPG 243
---HHHHHHHHH-- ----EE-------------------------EEEEE-----HHHHH--- ---EEEE-----
-EEEE---
Query: 256 HMFITDIP 263
Sbjct: 244 Y-FITDVP 250
- -----P
236 residues (87.73%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 24.66% helical, 33.79% extended, 41.55% loops/other (query: 25.65% 19.70% 54.65%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2QYX_A not_found 43.43.43.43 NONE -999.000 0 1 81.78% 10.59% OPTM -329.084 -599.440 0.808 0.524 0.365 0.708 0.811 12.870 -36.9 2.440 7.500 -8.5 0.090 -41.500 -71.0 0.820 5.400 7.0 -0.940 0.530 -48.1 1.210 7.300 43.5 -0.820 -4.630 -33.5 7.100 26.150 -8.8 3.380 -0.050 -46.3 -30.000 34.000 -115.0 -30.000 10.000 -127.0 3.660 27.500 13.0 3.320 16.000 -63.0 1.340 4.000 -22.0 -0.230 -12.000 -85.0 5.000 -0.3 0.913 -21.7 0.000 -9.3e+061 5.000 -0.3 0.204 0.1 0.06 0.70
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----HHHHHHHHHH--------------EEEEEEE-H HHHHHHHHHHH------EEEEE------------------
Query: 12 DAEAARKARATYRDGLVAPTSGIAPGFTQANMIVLPR---DWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRT 88
Sbjct: 321 RIKTALSKMFNAMAKVTYDIDE-ADGDVIVNTAFIDKKYLDEAFDILKEAYKKG-----LGISD---------------- 378
----HHHHHHHHH--------- ---EEEEEEEEEE---HHHHHHHHHHHHH-- -----
---EEEEEE--EEE--HHHHHHHHHH----EEEEE-----HHHHHHH----- ----------EEEE-----
Query: 89 DLPLYRIWRDGKLAEETADATSAWAERDDLVAFLIGCSFTFETPMVEAGIEI--------RHMTDKSNVPMYLTNRPCR- 159
Sbjct: 379 ---RFGIVEEN-----------------DRIKIQTICAVTLDGIFLRNSVPLIPKYGGILEITEDKERFIDIIGYDGSSL 438
EEEEEE-- -EEEEEEE--HHHHHHHHH-----EEEEEEEEEE----EEEEEEEE------
--------EEEEE----HHHHHHHHHHHH---------EE---HHH--HHH---------EEE----EEEEE-
Query: 160 -------PAGRLKGNMVVSMRPIPASRVADAATISGRFPAVHGAPVHVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWA 232
Sbjct: 439 DPHEVFFNFVDCEKTFLAGFREVHRVAREKLEEVLKKLN-WNGIKAIGE---------PNNELYG--IGVNKDMCGVVTM 506
-HHHH---------EEEEEEEEEE---HHHHHHHHHHH- ---EEEE-- ------- ------EEEEEEE
----HHHHHHH----EEEE-----EEEE------
Query: 233 CGVTPQAAVMASGVPFAITHAPGHMFITDIPDTA 266
Sbjct: 507 GGINPLVLLKENEIPIELKAMHEVVRFSDLKSYK 540
---HHHHHHHH-----EEEEEEEEEE----EE--
220 residues (81.78%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.09% helical, 18.86% extended, 46.05% loops/other (query: 25.65% 19.70% 54.65%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2EAW_A not_found 43.43.43.43 NONE -999.000 0 1 84.39% 11.95% OPTM -253.966 -529.680 0.782 0.474 0.585 0.738 0.752 6.750 -35.1 -0.270 29.000 10.5 0.750 5.000 -86.0 -0.930 -4.180 -10.2 -0.150 3.550 -51.8 -0.930 -4.040 26.5 -1.080 -0.790 -27.9 0.100 -3.040 -17.9 3.970 -2.150 -51.5 -30.000 -10.000 -120.0 -30.000 -3.000 -132.0 0.900 10.500 53.0 0.080 -2.000 -43.0 3.340 39.000 -130.0 3.890 26.000 -149.0 5.000 -0.0 0.493 -18.5 0.000 -9.3e+061 5.000 0.0 0.869 -0.1 0.61 0.79
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---HHHHH------ HHHHHHHHHH--------------EEEEEEE-HHHHHHHHHHHH- -----EEEEE--------
Query: 2 TIPTSYLNHTDAEA--ARKARATYRDGLVAPTSGIAPGFTQANMIVLPRDWAFDFLLYAQR-NPKPCPVLDVSDPGSPTT 78
Sbjct: 35 ELSFGARAELPRIHPVASKLLRLMQKKET------------NLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFT 102
---HHHHH------HHHHHHHHHHHHH-- -EEEE-----HHHHHHHHHHH-----EEEE---------
- ------------EEEEEE--EEE--HHHHHHHHHH-- --EEEEE-----HHHHHHH--------
Query: 79 L--------LAPGADLRTDLPLYRIWRDGKLAEETADATSAWAERD-------DLVAFLIGCSFTFETPMVEAGIEIRHM 143
Sbjct: 103 LDVMKELITLAKCHEF-------LIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--- 172
HHHHHHHHHHHHHH-- EEEEEEEE---HHHHHHHHH-----------EEEEE-----HHHHHHHHHH---
-------EEEE-------------EEEEE----HHHHHHHHHHHH---------EE---HHH--HHH---------EEE-
Query: 144 TDKSNVPMYLTNRPCRPAGRLKGNMVVSMRPIPASRVADAATISGRFPAVHGAPVHVGAPEQIGISDLSKPDFGDAVRIE 223
Sbjct: 173 ----HRGCLLIAEMSSTGSLA-----------TGDYTRAAVRMAEEHSEF-VVGFISG----------------SRVSMK 220
--EEEEE---------- -HHHHHHHHHHHH----- EEEEE-- ------
---EEEEE---- -HHHHHHH----EEEE-
Query: 224 PGEVPVFWACGV------------TPQAAVMASGVPFAITH 252
Sbjct: 221 PEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVG 261
---EEEE-------EE-----EE--HHHHH------EEEE-
227 residues (84.39%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 24.86% helical, 27.03% extended, 48.11% loops/other (query: 25.65% 19.70% 54.65%)
SCOP classification: [Alpha and beta proteins (a/b)]/[Flavodoxin-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1I1Q_B c.23.16.1 52.8.1.1 NONE -999.000 0 1 66.17% 9.27% OPTM -417.817 -339.470 0.653 0.590 0.214 0.818 0.899 2.780 -30.4 1.320 38.000 84.0 2.290 21.000 -113.0 0.630 3.530 50.6 -1.910 -2.990 -35.5 0.710 6.720 91.9 -1.020 0.780 -23.9 2.050 4.190 51.4 5.190 -1.400 -50.6 -30.000 4.000 -65.0 -30.000 -6.000 -109.0 3.140 57.000 126.0 0.460 11.000 -45.0 0.420 6.000 68.0 4.510 17.000 -96.0 5.000 -1.2 -1.809 -21.1 0.000 -9.3e+061 5.000 -1.2 1.041 -1.4 0.10 0.84
alignment source: OPTM
-EEEEEEE-HHHHHHHHHHHH------EEEEE---------------------EEEEEE--EEE--HHHHHHHHHH----
Query: 39 TQANMIVLPRDWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRTDLPLYRIWRDGKLAEETADATSAWAERDDL 118
Sbjct: 1 ADILLLDNIDSFTWNLADQLRTNG--HNVVIYRNHIPAQTLIDRLATMKN--PVLMLSPGPGVPSEAGCMPELLTRLRGK 76
-EEEEEE-----HHHHHHHHHH-- -EEEEEE-----HHHHHHH----- EEEEE------------HHHHHHHH---
EEEEE-----HHHHHHH---------------EEEE-------------EEEEE----HHHHHHHHHHHH---------E
Query: 119 VAFLIGCSFTFETPMVEAGIEIRHMTDKSNVPMYLTNRPCRPAGRLKGNMVVSMRPIPASRVADAATISGRFPAVHGAPV 198
Sbjct: 77 LPIIGIC-LGHQAIVEAYGGYVGQILHGKATSIEHDGQAMFAG--LANPLPVARYHSS------------NVPAGLTINA 141
--EEEE- HHHHHHHHH-----------EEEEEEE-------- ----EEEEE---- ------EEEE
E---HHH--HHH---------EEE----EEEEE----- HHHHHHH
Query: 199 HVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWACGVT-----PQAAVMA 243
Sbjct: 142 HFN-------------GMVMAVRHDADRVCGFQFHPESILTTQGARLLEQ 178
EE- -EEEEEEE----EEEE-----------HHHHHHH
178 residues (66.17%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 27.94% helical, 20.59% extended, 51.47% loops/other (query: 25.65% 19.70% 54.65%)
SCOP classification: [Alpha and beta proteins (a/b)]/[NAD(P)-binding Rossmann-fold domains]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.2.1.2.48_A c.2.1.2 52.11.11.1 NONE -999.000 0 1 70.63% 9.36% OPTM -221.245 -254.860 0.591 0.496 0.307 0.720 0.741 -0.080 -28.8 0.910 -7.500 9.5 0.680 8.000 -103.0 0.220 9.760 19.1 0.900 9.090 -46.6 0.820 12.930 53.1 -0.630 2.260 -24.8 6.390 17.990 3.2 6.040 3.920 -54.7 -30.000 13.000 -94.0 -30.000 9.000 -119.0 2.160 -5.000 43.0 1.950 12.000 -68.0 1.240 13.000 27.0 2.080 23.000 -85.0 5.000 0.0 1.169 -19.0 0.000 -9.3e+061 5.000 0.0 -0.553 0.6 0.33 0.94
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-----------EEEEEEE- HHHHHHHHHHHH------EEEEE---------------------EEEEEE--EEE--
Query: 29 APTSGIAPGFTQANMIVLP----RDWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRTDLPLYRIWRDGKLAEE 104
Sbjct: 1461 PTGAGEPARLDGTWLVAKYAGTADETSTAAREALESAGA---------------------------RVRELVVDARCG-- 1511
-----------EEEEEE-----HHHHHHHHHHHH----E EEEEE------H
HHHHHHHHHH----EEEEE---- -HHHHHHH---------------EEEE--------
Query: 105 TADATSAWAERDDLVAFLIGCSF-------------------TFETPMVEAGIEIRHMTDKSNVPMYLTNRPCRPAG--- 162
Sbjct: 1512 RDELAERLRSVGEVAGVLSLLAVDEAEPEEAPLALASLADTLSLVQAMVSAEL---------GCPLWTVTESAVATGPFE 1582
HHHHHHH-------EEEE----------------HHHHHHHHHHHHHHH---- --EEEEEE----------
-----EEEEE----HHHHHHHHHHHH---------EE--- HHH--HHH---------EEE----EEEEE
Query: 163 RLKGNMVVSMRPIPASRVADAATISGRFPAVHGAPVHVGA------PEQIGISDLSKPDFGDAVRIEPGEVPVFW 231
Sbjct: 1583 RVRN-------AAHGALWGVGRVIALENPAVWGGLVDVPAGSVAELARHLAAVVSGGAGEDQLALRADGVYGRRW 1650
---- --HHHHHHHHHHHHH----EEEEEEE-------HHHHHHHHH-------EEEEE--EEEEEEEE
190 residues (70.63%) of query sequence aligned
DONE: Sun Aug 17 11:52:55 2008 EST