LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Sun Aug 17 11:55:34 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0443
--> 248 residues, sequence name: T0443
Database: T:\CBSU\blastdb\20080108\nr
-> 0 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 1 | 22 | 17 | 0 | 0 | 0 | 0 | 0 | 4 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 16.59 | 15.93 | 18.58 | 21.99 |
2 | 16.59 | 0.00 | 16.11 | 19.98 | 20.92 |
3 | 15.93 | 16.11 | 0.00 | 17.88 | 18.89 |
4 | 18.58 | 19.98 | 17.88 | 0.00 | 19.35 |
5 | 21.99 | 20.92 | 18.89 | 19.35 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 16.26 | 17.07 | 16.26 | 20.33 |
2 | 16.26 | 100.00 | 12.84 | 9.13 | 10.65 |
3 | 17.07 | 12.84 | 100.00 | 10.91 | 9.63 |
4 | 16.26 | 9.13 | 10.91 | 100.00 | 14.16 |
5 | 20.33 | 10.65 | 9.63 | 14.16 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 32.52 | 39.02 | 32.52 | 34.96 |
2 | 32.52 | 100.00 | 25.23 | 24.66 | 18.98 |
3 | 39.02 | 25.23 | 100.00 | 29.55 | 18.81 |
4 | 32.52 | 24.66 | 29.55 | 100.00 | 21.92 |
5 | 34.96 | 18.98 | 18.81 | 21.92 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 54.05% helical, 0.00% extended, 45.95% loops/other (query: 54.84% 5.24% 39.92%)
SCOP classification: [All alpha proteins]/[Ferritin-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1NOG_A a.25.2.2 147.8.2.2 NONE -65.700 0 1 46.77% 10.57% OPTM -257.224 -135.120 0.112 0.457 0.333 0.585 0.696 -0.060 -25.5 -0.220 -18.000 174.5 0.930 -20.500 -79.5 -1.050 -3.280 81.2 1.380 4.450 -39.6 -0.570 -0.670 120.7 1.960 5.960 -29.4 0.870 -0.540 69.6 3.260 2.920 -50.8 -30.000 7.000 -41.0 -30.000 6.000 -101.0 0.510 -33.000 171.0 0.900 -16.000 -49.0 -0.990 0.000 133.0 0.950 8.000 -71.0 5.000 -999.0 1.647 -17.6 -44.000 247.0 5.000 -0.3 5.000 5.0 0.73 0.88
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH-- HHHHHH--HHHHHHHHHHHHHH--
Query: 4 ETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCY---------TETRQYFDSKEWSRLKEGFVRDAR 74
Sbjct: 56 FRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKE-MKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASK 134
HHHHHHHHHHHHHH---------HHHHHHHHHHHHHH HHHH------------HHHHHHHHHHHHHHHHHHHHHHHH--
---HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----------
Query: 75 AQTPYFQEIPGEFLQYCQSPPLSDGILALMDFEYTQLLAEVAQIPDIPDIHY 126
Sbjct: 135 LT-----EINKNVLIYAN---------RLSSILFMHALISNKRLN-IPEKIW 171
-- --HHHHHHHHH HHHHHHHHHHHHHHH--- -----W
116 residues (46.77%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 65.04% helical, 0.00% extended, 34.96% loops/other (query: 54.84% 5.24% 39.92%)
SCOP classification: [All alpha proteins]/[4-helical cytokines]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1EKU_A a.26.1.3 147.9.9.7 NONE -999.000 0 1 88.31% 11.42% OPTM -507.952 -287.880 1.508 0.465 0.265 0.661 0.749 -0.330 -37.1 2.500 59.000 -97.5 1.370 17.000 -115.5 0.710 -2.770 -33.6 -0.140 -0.640 -40.8 1.330 3.980 -13.7 0.650 -0.020 -26.9 5.210 7.090 -80.7 6.350 6.810 -83.3 -30.000 11.000 -160.0 -30.000 8.000 -161.0 0.970 26.000 14.0 -0.570 -11.000 -42.0 3.010 15.000 -93.0 2.500 2.000 -104.0 5.000 1.5 -1.339 -9.4 0.000 -9.3e+061 5.000 0.7 -0.018 0.6 0.87 0.69
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---HHHHHHHHHHHHHHH-- -------HHHHH HHHHHHHHHHHHHHHH--HHHHHH-- HHHHHHHH
Query: 1 MQPETSAQYQHRFSQAIRGG----EAADGLPQDRLN-----VYIRLIRNNIHSFIDRCYTETRQYFD-----SKEWSRLK 66
Sbjct: 2 MQDP-YVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFK----LFKNFKDDQSIQKSVETIK 76
---- HHHHHHHHHHH---------------HHHHH----HHHHHHHHHHHHHHHHH HHH-----HHHHHHHHHHH
HHHHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------------------HHHHHHH----
Query: 67 EGFVRDARAQTPYFQEIPGEFLQYCQSPPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYD 146
Sbjct: 77 EDMNVKFFNSN----KKKRDDFEKLTNYSVTD--LNVQRKAIDELIQVMAEFST----EEQQEGPY-VKEAENLKKYFNA 145
HHHHHHHH--- HHHHHHHHHHH------ HHHHHHHHHHHHHHHH---- -------- HHHHHHHHHH---
----------EEEEEE-----EEEEH- -HHHHHHHHHHH----- HHHHHHHHHHHH
Query: 147 VTHDLQEAETALLIWRNAEDDVMYQTL------------------DGFDMMLLEIMGSSALS------FDTLAQTLVEFM 202
Sbjct: 146 GHSDVADNG----------------TLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKF 209
--------- ---HHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
H----HHHHHHHHHHHH
Query: 203 PKADNWKNILLGKWSGW 219
Sbjct: 210 FNSNKKKRDDFEKLTNY 226
H---HHHHHHHHHHH--
219 residues (88.31%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 65.11% helical, 0.00% extended, 34.89% loops/other (query: 54.84% 5.24% 39.92%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2DB0_A not_found 143.143.143.143 NONE -999.000 0 1 80.24% 6.82% OPTM -524.067 -392.010 1.343 0.467 0.470 0.750 0.813 10.680 -40.2 3.350 36.500 -83.5 3.140 19.500 -117.5 0.310 1.760 -27.9 2.240 5.190 -51.9 0.370 2.990 -0.3 0.990 1.370 -31.8 1.730 2.790 -59.1 6.080 10.300 -82.8 -30.000 -7.000 -130.0 -30.000 15.000 -157.0 0.870 -22.000 20.0 -1.590 -16.000 -34.0 -0.110 -12.000 -75.0 1.890 13.000 -118.0 5.000 0.2 0.303 -14.3 0.000 -9.3e+061 5.000 0.3 0.544 1.1 0.78 0.69
alignment source: OPTM
--HHHHHHHHHHHHHHH---------HHHHHHHHHHHHH HHHHHHHH--HHHHHH--HHHHHHHHHHHHHH-----
Query: 2 QPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRN----NIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQT 77
Sbjct: 44 DLWTVVKNAISIIMVIAKT--REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVKSMIPVLFANYRIGD 120
-HHHHHHHHHHHHHHH--- ---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H HHHHHHHHHHHHH-----H
HHHHHHHHHHHHHHH--- --HHHHHHH HHHHHHHHHHHH-------------------HHHHHHH-----
Query: 78 -PYFQEIPGEFLQYCQSPP-----LSDGILALM----DFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDV 147
Sbjct: 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE--------------NSFKYVNPFLPRI 186
HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHHHHH----- -HHHH---HHHHH
---------EEEEEE-----EEEEH--HHHHHHHHHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Query: 148 THDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIE 221
Sbjct: 187 INLLHDGD------------------EIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242
-------H HHHHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHH
199 residues (80.24%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 55.24% helical, 0.00% extended, 44.76% loops/other (query: 54.84% 5.24% 39.92%)
SCOP classification: [All alpha proteins]/[alpha-alpha superhelix]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1KU1_A a.118.3.1 147.19.1.1 NONE -999.000 0 1 83.06% 11.89% OPTM -491.133 -320.240 1.284 0.406 0.230 0.789 0.846 6.210 -33.0 0.900 12.500 -37.0 0.720 -0.500 -105.5 2.080 4.490 -9.5 0.900 -0.130 -44.2 1.110 5.910 22.1 0.210 -2.780 -29.3 3.530 7.580 -30.8 6.860 15.250 -74.5 -30.000 -5.000 -110.0 -30.000 7.000 -137.0 1.800 33.000 3.0 0.500 7.000 -56.0 0.610 -11.000 -8.0 4.050 24.000 -100.0 5.000 -0.2 1.063 -20.2 9.000 345.0 5.000 -0.2 -0.201 -0.3 0.76 0.89
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
---HHHHHHHHHHHHHHH---------HHHHHHHHH HHHHHHHHHHHH-- HHHHHH--HHHHHHHHHH
Query: 1 MQPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIR------LIRNNIHSFIDRCY------TETRQYFDSKEWSRLKEG 68
Sbjct: 572 GSHMDRKTEFIECTNAFNEK------PKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK-VSLLNE 644
--HHHHHHHHHHHHHHHH-H HHHHHHHHH--------HHHHHHHHHH------HHHHHHHH-----H HHHHHH
HHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---- --------------- HHHHHHH---
Query: 69 FVRDARAQTPYFQEIPGEFLQYCQSPPLSDGILALMDFEYTQLLAEVAQIPD-IPDIHYSNDSKYTPS--PAAFIRQYRY 145
Sbjct: 645 YIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSII 724
HH--------HHHHHHHH---------HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
-----------EEEEEE-----EEEEH--HHHHHHHHHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHH--EE
Query: 146 DVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRII 225
Sbjct: 725 MLNTDLHNPQ--------VKE---------------------HMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIV 775
HHHHH----- --- --HHHHHHH-----------HHHHHHHHHHHHH-----
E-
Query: 226 IP 227
Sbjct: 776 MP 777
-P
206 residues (83.06%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 57.26% helical, 0.00% extended, 42.74% loops/other (query: 54.84% 5.24% 39.92%)
SCOP classification: [All alpha proteins]/[VPS9 domain]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
a.222.1.1.1_A a.222.1.1 147.1.1.1 NONE -999.000 0 1 83.87% 10.96% OPTM -459.766 -236.320 1.279 0.450 0.387 0.675 0.761 5.840 -38.8 0.930 18.000 -62.5 1.380 21.500 -115.5 2.160 8.010 -43.1 1.730 4.130 -52.2 2.330 6.730 -21.0 2.000 8.760 -36.0 1.620 4.820 -66.0 3.030 4.120 -74.8 -30.000 7.000 -140.0 -30.000 3.000 -148.0 1.950 69.000 -30.0 0.090 5.000 -60.0 0.890 -3.000 -97.0 0.550 -4.000 -114.0 5.000 -0.9 -1.579 -19.9 0.000 -9.3e+061 5.000 -0.9 0.763 0.4 0.61 0.85
alignment source: OPTM
HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH --HHHHHH--HHHHHHHHHHHHHH--
Query: 4 ETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDR---CYTETRQYFDSKEWSRLKEGFVRDAR------ 74
Sbjct: 180 ECAQDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCP----ETTDDEKKDLAIQKRIRALRWVTPQM 252
HHHHHHHHHHHHHH--- ---HHHHHHHHHHHHHHHHHHHHHHH---- ---HHHHHHHHHHHHHH---------
---HHHHHHHHHHHHHHH- ----HHHHHHHHHHHHHHHHHHH-------------------HHHHHHH---
Query: 75 ------AQTPYFQEIPGEFLQYCQS---PPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRY 145
Sbjct: 253 LCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEP----ASADDFLPTLIYIVLKGNP 328
--------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---- -HHHHHHHHHHHHHHH---
-----------EEEEEE-----EEEEH--HHHHHHHHHHH----- HHHHHHHHHHHHH--- -HHHHHHHHHHH
Query: 146 DVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALS------FDTLAQTLVEFMPKAD-NWKNILLGKWSG 218
Sbjct: 329 PR-------------------------LQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDR 383
-H HHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---------HHHHHHH
HHH-
Query: 219 WIEQ 222
Sbjct: 384 YMSG 387
H--G
208 residues (83.87%) of query sequence aligned
DONE: Sun Aug 17 19:10:03 2008 EST