LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Mon Aug 18 04:20:40 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0445
--> 264 residues, sequence name: T0445
Database: T:\CBSU\blastdb\20080108\nr
-> 0 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 72 | 10 | 0 | 0 | 0 | 0 | 0 | 0 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 2.34 | 3.35 | 2.79 | 1.69 |
2 | 2.34 | 0.00 | 3.47 | 2.98 | 2.76 |
3 | 3.35 | 3.47 | 0.00 | 3.35 | 3.44 |
4 | 2.79 | 2.98 | 3.35 | 0.00 | 3.26 |
5 | 1.69 | 2.76 | 3.44 | 3.26 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 44.40 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 48.84 | 100.00 | 100.00 |
3 | 44.40 | 48.84 | 100.00 | 60.62 | 54.30 |
4 | 100.00 | 100.00 | 60.62 | 100.00 | 55.00 |
5 | 100.00 | 100.00 | 54.30 | 55.00 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.94% helical, 23.95% extended, 44.11% loops/other (query: 37.88% 23.11% 39.02%)
SCOP classification: [Alpha and beta proteins (a/b)]/[HAD-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1RLM_A c.108.1.10 133.43.43.16 NONE -68.064 0 1 98.86% 24.33% OPTM -1365.851 -868.380 9.571 0.712 0.903 0.968 0.991 64.000 -104.7 12.120 314.000 -331.5 18.730 260.500 -364.5 3.680 30.690 -81.2 6.050 29.520 -94.5 7.110 52.820 -73.2 20.610 74.600 -116.1 17.970 122.070 -141.1 34.630 91.740 -167.6 -30.000 85.000 -217.0 -30.000 66.000 -224.0 24.350 517.000 -448.0 52.770 423.000 -484.0 15.440 157.000 -270.0 20.620 154.000 -289.0 5.000 -73.5 0.693 -15.3 79.000 354.0 5.000 -73.5 0.602 -17.2 0.62 0.86
alignment source: OPTM
EEEEEE---------------HHHHHHHHHHHH---EEEEE----HHHHHHHHHH-----EEEE---EEEE----EEEEE
Query: 2 IKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTY 81
Sbjct: 3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHG 82
-EEEE--------------HHHHHHHHHHHHHH--EEEEE----HHHH-----------EEEE----EEEE--EEEEE--
---HHHHHHHHHHHHH----EEEEEE---EEEE-----HHHHHHHHH-----EE---HHHH----EEEEEEE---HHHHH
Query: 82 PMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEEL 161
Sbjct: 83 ELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYH-RLKPVKDYQEID-DVLFKFSLNLPDEQIPL 160
--HHHHHHHHHHHH-----EEEEEE---EEEE----HHHHHHHH----- EEEE-------- -EEEEEEE-----HHHH
HHHHHHHHH---EEEEE----EEEEE-----HHHHHHHHHHH-----HHEEEE-----HHHHHHH---EEEE---HHHHH
Query: 162 CTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEVI 241
Sbjct: 161 VIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIK 240
HHHHHHH-----EEEE----EEEEE-----HHHHHHHHHHHH------EEEEE-----HHHHHH--EEEE-----HHHHH
HHH----------HHHHHHHHHH
Query: 242 AAAKHTCAPYWENGVLSVLKSFL 264
Sbjct: 241 QIARYATDDNNHEGALNVIQAVL 263
H--EE-------HHHHHHHHHHH
261 residues (98.86%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 33.33% helical, 22.59% extended, 44.07% loops/other (query: 37.88% 23.11% 39.02%)
SCOP classification: [Alpha and beta proteins (a/b)]/[HAD-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1RKQ_A c.108.1.10 133.43.43.16 NONE -68.159 0 1 98.48% 20.38% OPTM -1143.200 -815.270 8.562 0.677 0.890 0.962 0.977 57.200 -93.0 10.280 167.500 -217.5 11.510 154.500 -239.5 3.400 20.290 -71.0 4.360 16.320 -84.9 7.040 53.280 -64.9 11.350 42.670 -83.5 14.940 107.220 -132.4 33.170 75.360 -145.1 -30.000 92.000 -215.0 -30.000 71.000 -216.0 21.770 469.000 -403.0 47.620 375.000 -427.0 16.110 177.000 -272.0 23.550 155.000 -284.0 5.000 -56.0 -0.533 -15.8 0.000 -9.3e+061 5.000 -56.0 0.934 -9.3 0.66 0.90
alignment source: OPTM
EEEEE---------------HHHHHHHHHHHH---EEEEE----HHHHHHHHHH- ----EEEE---EEEE--- -E
Query: 3 KLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPI---KHKLLYITDGGTVVRTPK--EI 77
Sbjct: 5 KLIAIDMDGTLLLPDH-TISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGST 83
EEEE------------ --HHHHHHHHHHHH---EEEEE--------HHHHHH--------EEEE----EEEE-----EE
EEEE---HHHHHHHHHHHHH----EEEEEE---EEEE-- ---HHHHHHHHH-----EE---HHHH--- -EEEEEEE--
Query: 78 LKTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAED-GGSPIFHLLRDSYGFEMREVDDITRLDRN-DIIKFTVFHP 155
Sbjct: 84 VAQTALSYDDYRFLEKLSREVGS--HFHALDRTTLYTANRDISYYTVHESFVATIPLVFCE-AEKMDPNTQFLKVMMIDE 160
EE----HHHHHHHHHHHHHH--E EEEE----EEE------HHHHHHHHH----EEE--- ----------EEEEE--H
-HHHHHHHHHHHHHH---EEEEE----EEEEE-----HHHHHHHHHHH-----HHEEEE-----HHHHHHH---EEEE--
Query: 156 DKCEELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSN 235
Sbjct: 161 PAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDN 240
HHHHHHHHH--HHHHHHEEEEEEE--EEEEEE----HHHHHHHHHHHH------EEEEE-----HHHHHH--EEEE----
-HHHHHHHH----------HHHHHHHH
Query: 236 ARQEVIAAAKHTCAPYWENGVLSVLKS 262
Sbjct: 241 AIPSVKEVANFVTKSNLEDGVAFAIEK 267
-HHHHHH--EE-------HHHHHHHHH
260 residues (98.48%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 36.68% helical, 22.78% extended, 40.54% loops/other (query: 37.88% 23.11% 39.02%)
SCOP classification: [Alpha and beta proteins (a/b)]/[HAD-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1NF2_A c.108.1.10 133.43.43.16 NONE -68.189 0 1 97.73% 22.69% OPTM -1274.429 -854.320 8.888 0.696 0.841 0.953 0.968 52.660 -91.7 11.220 216.000 -269.0 12.940 182.500 -280.0 4.690 27.290 -82.2 5.820 23.090 -95.5 9.510 62.660 -86.5 13.010 50.850 -96.7 19.540 111.740 -143.3 30.460 73.360 -148.0 -30.000 86.000 -215.0 -30.000 73.000 -217.0 23.370 510.000 -442.0 49.260 397.000 -450.0 15.020 155.000 -270.0 21.780 149.000 -276.0 5.000 -54.0 0.217 -13.4 0.000 -9.3e+061 5.000 -54.0 -0.569 -11.4 0.77 0.97
alignment source: OPTM
-EEEEEE---------------HHHHHHHHHHHH---EEEEE----HHHHHHHHHH- ----EEEE---EEEE---- EE
Query: 1 MIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPI-KHKLLYITDGGTVVRTPKE-IL 78
Sbjct: 1 MYRVFVFDLDGTLLND-NLEISEKDRRNIEKLSRK-CYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVI 78
---EEEEE-------- -----HHHHHHHHHH--- -EEEEE----HHHHHHHHHHH------EEE----EEEE---EEE
EEE---HHHHHHHHHHHHH----EEEEEE---EEEE-----HHHHHHHHH-----EE---HHHH--- -EEEEEEE---H
Query: 79 KTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRN-DIIKFTVFHPDK 157
Sbjct: 79 LNEKIPPEVAKDIIEYIKP--LNVHWQAYIDDVLYSEKDNEEIKSYARHSN-VDYRVEPNLSELVSKMGTTKLLLIDTPE 155
EE----HHHHHHHHHHH-- ----EEEE----EEE----HHHHHHHHH-- --EEE---HHHHHHHH---EEEEE--HH
HHHHHHHHHHHHH---EEEEE----EEEEE-----HHHHHHHHHHH-----HHEEEE-----HHHHHHH---EEEE---H
Query: 158 CEELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNAR 237
Sbjct: 156 RLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAI 235
HHHHHHHHHHHHH----EEEEEE--EEEEE-----HHHHHHHHHHHH------EEEEE--HHHHHHH----EEEE-----
HHHHHHH----------HHHHHH
Query: 238 QEVIAAAKHTCAPYWENGVLSVL 260
Sbjct: 236 EKVKEASDIVTLTNNDSGVSYVL 258
HHHHHH--EE-------HHHHHH
258 residues (97.73%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 33.33% helical, 20.57% extended, 46.10% loops/other (query: 37.88% 23.11% 39.02%)
SCOP classification: [Alpha and beta proteins (a/b)]/[HAD-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2B30_A c.108.1.10 133.43.43.16 NONE -68.204 0 1 99.62% 21.29% OPTM -1185.446 -887.590 8.083 0.691 0.902 0.913 0.986 60.490 -95.7 8.690 273.000 -225.5 13.630 149.000 -264.0 2.600 17.050 -66.8 2.890 -0.630 -89.2 5.140 46.030 -48.8 8.910 34.030 -86.4 13.510 72.650 -103.7 35.280 64.490 -140.9 -30.000 73.000 -210.0 -30.000 71.000 -222.0 19.620 415.500 -329.5 43.230 333.000 -388.0 13.870 145.000 -246.0 18.530 150.000 -277.0 5.000 -38.0 1.215 -13.2 0.000 -9.3e+061 5.000 -37.7 0.176 -12.0 0.67 0.86
alignment source: OPTM
EEEEEE---------------HHHHHHHHHHHH---EEEEE----HHHHHHHHHH -----EEEE---EEEE--
Query: 2 IKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAP-------IKHKLLYITDGGTVVRTP 74
Sbjct: 27 IKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQI 106
-EEEEE--------------HHHHHHHHHHHHH--EEEEE----HHHHHHHH-HHHHHHH------EEE----EEE----
--EEEEE---HHHHHHHHHHHHH- ---EEEEEE---EEEE-----HHHHHHHHH-----EE---HHHH-- --EEEEEE
Query: 75 KEILKTYPMDEDIWKGMCRMVRDE-LPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDR-NDIIKFTV 152
Sbjct: 107 GYTLLDETIETDVYAELISYLVEKNLVNQTIFHRGESNYVTEDNKY--ADFLQKMYSENRSIIIRHNEMLKYRTMNKLMI 184
-EEEE----HHHHHHHHHHHHH------EEEEE--EEEEE------ -HHHHHH-----EEE-HHHH-------EEEE-
E---HHHHHHHHHHHHHH---EEEEE----EEEEE-----HHHHHHHHHHH-----HHEEEE-----HHHHHHH---EEE
Query: 153 FHPDKCEELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYA 232
Sbjct: 185 VLDPSESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFA 264
-----HHHHHHHHHHH----EEEEE-----EEEEE----HHHHHHHHHHH-------EEEEE-----HHHHH---EEEE-
E---HHHHHHHH----- -----HHHHHHHHHH
Query: 233 VSNARQEVIAAAKHTCA-PYWENGVLSVLKSFL 264
Sbjct: 265 VANATDSAKSHAKCVLPVSHREGAVAYLLKKVF 297
----HHHHHH--EE--------HHHHHHHHHH-
263 residues (99.62%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 31.42% helical, 23.75% extended, 44.83% loops/other (query: 37.88% 23.11% 39.02%)
SCOP classification: [Alpha and beta proteins (a/b)]/[HAD-like]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1RLO_A c.108.1.10 133.43.43.16 NONE -68.265 0 1 97.73% 23.08% OPTM -1063.813 -819.330 9.217 0.670 0.828 0.974 0.989 64.280 -101.9 11.880 300.500 -327.5 18.320 244.500 -350.5 3.310 22.310 -70.5 5.600 22.050 -98.4 8.590 65.870 -77.6 15.880 65.670 -113.4 18.750 121.340 -143.1 34.440 86.320 -163.2 -30.000 88.000 -215.0 -30.000 71.000 -220.0 23.840 534.000 -481.0 56.270 437.000 -504.0 15.660 163.000 -267.0 20.570 162.000 -285.0 5.000 -71.2 1.250 -15.5 0.000 -9.3e+061 5.000 -71.2 1.633 -15.2 0.25 0.86
alignment source: OPTM
EEE---------------HHHHHHHHHHHH---EEEEE----HHHHHHHHHH-----EEEE---EEEE----EEEEE---
Query: 5 IATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMD 84
Sbjct: 5 VIVTMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELT 84
EE--------------HHHHHHHHHHHHH---EEEEE----HHHH-----------EEEE----EEEE--EEEEE----H
HHHHHHHHHHHHH----EEEEEE---EEEE-----HHHHHHHHH-----EE---HHHH----EEEEEEE---HHHHHHHH
Query: 85 EDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTP 164
Sbjct: 85 RHESRIVIGELLKD-KQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEID-DVLFKFSLNLPDEQIPLVID 162
HHHHHHHHHHH--- ---EEEEE---EEEE----HHHHHHH------EEEE-------- -EEEEEEEEE---HHHHHHH
HHHHHH---EEEEE----EEEEE-----HHHHHHHHHHH-----HHEEEE-----HHHHHHH---EEEE---HHHHHHHH
Query: 165 VFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEVIAAA 244
Sbjct: 163 KLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIA 242
HHHHH----EEEE----EEEEE-----HHHHHHHHHHHH------EEEEE-----HHHHHH--EEEE-----HHHHHH--
----------HHHHHHHHHH
Query: 245 KHTCAPYWENGVLSVLKSFL 264
Sbjct: 243 RYATDDNNHEGALNVIQAVL 262
EE-------HHHHHHHHHH-
258 residues (97.73%) of query sequence aligned
DONE: Mon Aug 18 10:48:39 2008 EST