LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Wed Aug 13 16:29:12 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0449
--> 307 residues, sequence name: T0449
Database: T:\CBSU\blastdb\20080108\nr
-> 14 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 68 | 84 | 9 | 1 | 4 | 0 | 1 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 9.43 | 8.44 | 7.48 | 10.86 |
2 | 9.43 | 0.00 | 11.96 | 11.39 | 13.78 |
3 | 8.44 | 11.96 | 0.00 | 4.10 | 9.92 |
4 | 7.48 | 11.39 | 4.10 | 0.00 | 9.08 |
5 | 10.86 | 13.78 | 9.92 | 9.08 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 49.49 | 28.62 | 29.31 | 15.97 |
2 | 49.49 | 100.00 | 21.45 | 21.45 | 17.01 |
3 | 28.62 | 21.45 | 100.00 | 64.48 | 20.49 |
4 | 29.31 | 21.45 | 64.48 | 100.00 | 20.14 |
5 | 15.97 | 17.01 | 20.49 | 20.14 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 67.92 | 55.86 | 55.52 | 28.82 |
2 | 67.92 | 100.00 | 56.06 | 56.06 | 22.22 |
3 | 55.86 | 56.06 | 100.00 | 100.00 | 34.38 |
4 | 55.52 | 56.06 | 100.00 | 100.00 | 34.38 |
5 | 28.82 | 22.22 | 34.38 | 34.38 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 3.11% helical, 41.61% extended, 55.28% loops/other (query: 0.00% 40.07% 59.93%)
SCOP classification: [All beta proteins]/[Supersandwich]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1LUR_A b.30.5.4 215.17.14.5 NONE -81.613 0 1 96.09% 17.29% OPTM -699.763 -715.570 3.640 0.528 0.883 0.824 0.899 32.920 -79.1 2.360 72.000 -96.5 3.890 43.500 -182.5 0.020 -1.230 -18.9 0.540 1.780 -43.1 0.220 -0.490 15.4 3.580 9.330 -30.6 1.410 -1.130 -69.5 8.670 20.210 -105.3 -30.000 15.000 -204.0 -30.000 26.000 -217.0 8.520 198.000 -114.0 13.380 85.000 -151.0 8.720 93.000 -162.0 12.450 72.000 -180.0 5.000 -11.7 3.417 -31.9 -71.000 410.0 5.000 -11.5 0.176 -3.7 0.72 0.91
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEE----EEEEEE----EEEEEE----- -EEEE------ -----EEEEEEE-------EE-----EE--
Query: 1 MDYTIENNMIKVVISDHGAEIQSVKSAHTD--EEFMWQANPEI------WGRHAPVLFPIVGRLKNDEYTYKGKTYHLG- 71
Sbjct: 1006 IEIANKQG-LTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTTPN 1084
EEE----- EEEEE----EEEEEEEE-----EEE-------HHHHHH-------EE-----EE----EEE--EEE-----
---- -----EEEEE----EEEEEEE------------EEEEEEEEE-- -EEEEEEEEEE-----EEEE---
Query: 72 -----QHGF---ARNADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVNYNLMN-NLLEENFSVVNKSDETMIFGVGG 142
Sbjct: 1085 NGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGL-PGDAKIDVTYTVNDRNQLIIEHHATCDT--PGLLALTN 1161
---EE------------EEEEEE--EEEEEEEEEHHHH--- -EEEEEEEEEE----EEEEEEEEE---- EE---EE-
--EEE---- ------EEEEEE---- --------------- ----------E-----------EEEE--
Query: 143 HPGFNLPTD-----HGENKEDFYFDMHPSV--TRVRIPLKDASLDWN-----NRSLAPTDSLIALSDDLFKDDALIYELR 210
Sbjct: 1162 HAYWNLDGSDTVAEHFLEEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDL------DNDLVITKK 1235
-EE-----------EE--EEEEEEE-----EEEEEEE-----------EE--------------E EEEEE----
----EEEEEE-----EEEEEE----EEEEEE-- -----E EEEE---------------------EEE--
Query: 211 GNDNKVSLRTDKNKFHVNVWTRDAPFVGIWSQY------PKTDNY-----VCIEPWWGIADRDDADGDLEHKYGMNHLKP 279
Sbjct: 1236 TPSTYLRFWSEKSGIELSITTS-YPVIHLYASKFLDCKGKKGEHYKANKALAIEPQFHSAA-----PNFDH-FPDVSLRP 1308
----EEEE-----EEEEEEE-- -EEEEE------EE-----EE-----EEEEEE------ ----- ---EE---
--EEEEEEEEEEEE--
Query: 280 GKEFQAGFSMTYHSTT 295
Sbjct: 1309 GDHYCQEIVYTFSHVN 1324
--EEEEEEEEEEE--N
295 residues (96.09%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 5.04% helical, 37.69% extended, 57.27% loops/other (query: 0.00% 40.07% 59.93%)
SCOP classification: [All beta proteins]/[Supersandwich]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1L7J_A b.30.5.4 215.17.14.5 NONE -81.754 0 1 95.44% 21.50% OPTM -674.042 -588.820 3.380 0.471 0.751 0.797 0.916 30.840 -78.7 3.380 95.000 -110.5 3.920 76.000 -175.5 0.390 11.590 24.4 1.040 8.060 -62.5 0.530 17.810 61.6 2.150 11.900 -44.5 1.610 14.120 -35.2 6.960 16.890 -100.5 -30.000 31.000 -198.0 -30.000 37.000 -215.0 7.220 202.500 -69.5 16.530 103.000 -149.0 5.460 63.000 -146.0 9.710 51.000 -191.0 5.000 -13.4 -0.537 -14.7 0.000 -9.3e+061 5.000 -11.0 -0.268 -4.0 0.64 0.85
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEEE--- -EEEEEE----EEEEEE------EEEE--- --------EEEEEEE-------EE-----EE---
Query: 2 DYTIENN-MIKVVISDHGAEIQSVKSAHTDEEFMWQAN-----PEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQ--- 72
Sbjct: 14 LISLTNKAGVTISFTNLGARIVDWQKD--GKHLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEG 91
EEEE-----EEEEE----EEEEEE--- ---------HHHHHH-------EE-----EE---EEEE--EEEE-------
--- -----EEEEE---- EEEEEEE------------EEEEEEEEE-- -EEEEEEEEEE-----EEEE--
Query: 73 ----HGF-----ARNADFEVENHTKE-SITFLLKDNEETRKVYPFKFEFRVNYNLMN-NLLEENFSVVNKSDETMIFGVG 141
Sbjct: 92 PQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNG-YPGKIEMSVTHSFDDDNKWKIHYEAISDKD--TVFNPT 168
-EE------------EEEEEE---EEEEEEEEEE------- ---EEEEEEEEEE---EEEEEEEEEE---E E---EE
---EEE---------- EEEEEE-------- ----------- ---- ------E--
Query: 142 GHPGFNLPTDHGENKE--------DFYFDMHPSVTRVR---IPLKDASLDWN---------NRSL------APTDSLIAL 195
Sbjct: 169 GHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLL 248
--EE-------------EEEE-EEEE--------------EE-----------EEHHHHH----HHHHHH---EEEEEE-
---------EEEE------EEEEEE-----EEEEEE----EEEEEE-------EEEEE---------------------E
Query: 196 SDDLFKDDALIYELRGNDNKVSLRTDKNKFHVNVWTRDAPFVGIWSQYPKTDNYVCIEPWWGIADRDDADGDLEHKYGMN 275
Sbjct: 249 DQLGLDKEQARLTLD--DTSISVFTDQP--SIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDI---- 320
--------EEEEE-- EEEEEEE---E EEEE---------EE--EE------EE-EEE--------------E
EE----EEEEEEEEEEEE-
Query: 276 HLKPGKEFQAGFSMTYHST 294
Sbjct: 321 SLKAGEKYQATTIYSLHTK 339
E-----EEEEEEEEEE--K
293 residues (95.44%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 4.55% helical, 45.80% extended, 49.65% loops/other (query: 0.00% 40.07% 59.93%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2CIQ_A not_found 77.77.77.31 NONE -81.838 0 1 91.21% 20.69% OPTM -742.935 -715.750 3.616 0.546 0.800 0.848 0.857 28.120 -76.1 3.680 54.500 -124.0 7.670 87.500 -218.0 -0.400 -3.910 -12.0 -0.680 -3.420 -47.9 -0.830 -12.800 25.2 -1.680 -3.350 -30.5 2.310 -0.050 -60.4 6.030 5.930 -89.0 -30.000 18.000 -180.0 -30.000 10.000 -182.0 9.440 166.500 -130.5 25.440 185.000 -233.0 2.980 34.000 -116.0 10.550 67.000 -189.0 5.000 -25.5 -1.927 -17.6 0.000 -9.3e+061 5.000 -25.5 -0.102 -7.0 0.71 0.79
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEE--- -EEEEEE----EEEEEE------EEEE------- ---- EEEEEEE-------EE-----EE--
Query: 1 MDYTIENN---MIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIW--GRHA----PVLFPIVGRLKNDEYTYKGKTYHLG 71
Sbjct: 8 KEVVLTHPADETTSVHILKYGATVYSWKLKS--EEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK-----LP 80
EEEEEE--EEEEEEEEE----EEEEEEE--E E---------------------EE---------------- --
---------EEEEE---- EEEEEEE----- -------EEEEEEEEE---EEEEEEEEEE-- ---EEEE-----
Query: 72 QHGFARNADFEVENHTKE---SITFLLKDNEET---RKVYPFKFEFRVNYNLMNNLLEENFSVVNKS-DETMIFGVGGHP 144
Sbjct: 81 QHGLARNSTWEFLGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHT 160
---------EEEEEEEE--EEEEEEE------HHHHHH-----EEEEEEEE---EEEEEEEEE-------EEEEEEE--E
EEE----------EEEEEE-----------------------------E-----------EEEE------EEEEEE----
Query: 145 GFNLPTDHGENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNK 224
Sbjct: 161 YFRIEDIEG-----TMVSNLAGMKLYDQLLKESYVDKHP--------VVTFN----QETDVIYQNVSAERAIQIVDKG-V 222
EE------E EEE-----EEEE----EEEE----E E---- -EEEEE--------EEEEE--E E
-EEEEEE----EEEEEE-- ----- EEEEE---------------------EEE----EEEEEEEEE
Query: 225 FHVNVWTRDAPFVGIWSQY-----------PKTDN--YVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMT 290
Sbjct: 223 QIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHD--------------FISLAPGKKWNAYQLLC 287
EEEEEEE---EEEEEE-HHHHHHH------------EEEEEEEEEEEE EEE----EEEEEEEEE-
280 residues (91.21%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 4.55% helical, 44.06% extended, 51.40% loops/other (query: 0.00% 40.07% 59.93%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2CIR_A not_found 77.77.77.31 NONE -81.970 0 1 91.21% 20.69% OPTM -647.864 -581.750 3.557 0.516 0.830 0.844 0.853 27.310 -75.2 3.620 55.000 -128.0 8.110 93.000 -219.5 -0.200 -10.680 -10.0 -0.380 0.140 -44.0 -0.500 -19.130 26.3 0.210 1.300 -30.3 2.580 -3.760 -59.4 5.980 6.980 -89.4 -30.000 20.000 -183.0 -30.000 12.000 -185.0 9.630 162.500 -128.5 25.350 186.000 -234.0 3.220 41.000 -117.0 10.390 63.000 -186.0 5.000 -25.3 -1.793 -17.4 0.000 -9.3e+061 5.000 -25.3 -0.119 -7.1 0.72 0.83
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
-EEEE--- -EEEEEE----EEEEEE------EEEE---------- -EEEEEEE-------EE-----EE--
Query: 1 MDYTIENN---MIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRH------APVLFPIVGRLKNDEYTYKGKTYHLG 71
Sbjct: 8 KEVVLTHPADETTSVHILKYGATVYSWKLKS--EEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK-----LP 80
EEEEEE--EEEEEEEEE----EEEEEEE--E E---------------------EE---------------- --
---------EEEEE---- EEEEEEE----- -------EEEEEEEEE---EEEEEEEEEE-- ---EEEE-----
Query: 72 QHGFARNADFEVENHTKE---SITFLLKDNEET---RKVYPFKFEFRVNYNLMNNLLEENFSVVNKS-DETMIFGVGGHP 144
Sbjct: 81 QHGLARNSTWEFLGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHT 160
---------EEEEEEEE--EEEEEEE------HHHHHH-----EEEEEEEE----EEEEEEEE-------EEEEEEE--E
EEE----------EEEEEE-----------------------------E-----------EEEE------EEEEEE----
Query: 145 GFNLPTDHGENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNK 224
Sbjct: 161 YFRIEDIEG-----TMVSNLAGMKLYDQLLKESYVDKHP--------VVTFN----QETDVIYQNVSAERAIQIVDKG-V 222
EE------E EEE-----EEEE----EEEE----- ----- -EEEEE--------EEEEE--E E
-EEEEEE----EEEEEE-- ----- EEEEE---------------------EEE----EEEEEEEEE
Query: 225 FHVNVWTRDAPFVGIWSQY-----------PKTDN--YVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMT 290
Sbjct: 223 QIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHD--------------FISLAPGKKWNAYQLLK 287
EEEEEEE---EEEEEE-HHHHHHH------------EEEEEEEEEEEE EEE----EEEEEEE---
280 residues (91.21%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 0.00% helical, 44.40% extended, 55.60% loops/other (query: 0.00% 40.07% 59.93%)
SCOP classification: [All beta proteins]/[Supersandwich]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1JOV_A b.30.5.7 215.17.14.1 NONE -82.067 0 1 80.13% 12.85% OPTM -685.072 -616.020 2.151 0.462 0.738 0.759 0.811 20.370 -63.8 0.760 -8.500 -14.5 1.070 0.000 -108.5 0.700 12.260 -0.3 0.420 0.810 -39.9 1.110 16.170 33.7 0.170 3.940 -23.1 4.410 20.230 -50.6 4.360 -3.310 -81.9 -30.000 29.000 -178.0 -30.000 7.000 -190.0 1.780 39.500 54.5 8.770 67.000 -112.0 -0.410 -21.000 -48.0 6.940 27.000 -156.0 5.000 -11.0 2.194 -32.1 43.000 315.0 5.000 -11.0 0.663 -1.1 0.51 0.91
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
EEE----EEEEEE----EEEEEE------EEEE---------- -EEEEEEE-------EE-----EE-------
Query: 3 YTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRH------APVLFPIVGRLKNDEYTYKGKTYHLGQHGFA 76
Sbjct: 24 LHLKHAVGTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQP------------AHGTA 91
EEEE--EEEEEE----EEEEEEE---------------------------EE----------- -----
----EEEEE---- EEEEEEE------------EEEEEEEEE---EEEEEEEEEE-----EEEE-----EEE-----
Query: 77 RNADFEVENHTKE----SITFLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETMIFGVGGHPGFNLPTDH 152
Sbjct: 92 RIRLWQLSHYYISVHKVRLEFELFSDLN-------IIEAKVSMVFTD---KCHLTFTHYGEESAQAALHT--YFNIGD-- 157
----EEEEEEEE--EEEEEEEEE----- EEEEEEEEE--- EEEEEEE-----EEEEE--E EE----
-----EEEEEE-----------------------------E-----------EEEE------EEEEEE-----EEEEEE-
Query: 153 GENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNKFHVNVWTR 232
Sbjct: 158 ---INQVEVQGLP----------ETCFNSLNQQQENVPSPRHISE----NVDCIYSAE--NMQNQILDKSFNRTIALHHH 218
--EEEE---- EEEE----EEEE---------- EEEEEE--- -EEEEEE----EEEEEEEE-
---EEEEEE------ -EEEEE---------------------EEE----EEEEEEEEE
Query: 233 DAPFVGIWSQYPKTD---------NYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMT 290
Sbjct: 219 NASQFVLWNPWHKKTSGMSETGYQKMLCLETARIHH----------------LLEFGESLSVEISLK 269
--EEEEEE----------------EEEEEEEEEEEE E----EEEEEEEE-K
246 residues (80.13%) of query sequence aligned
DONE: Thu Aug 14 00:18:19 2008 EST