LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Fri Aug 15 11:57:52 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0456
--> 286 residues, sequence name: T0456
Database: T:\CBSU\blastdb\20080108\nr
-> 243 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 0 | 0 | 202 | 25 | 13 | 3 | 0 | 2 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 1.70 | 3.70 | 3.65 | 5.63 |
2 | 1.70 | 0.00 | 2.89 | 3.08 | 5.43 |
3 | 3.70 | 2.89 | 0.00 | 1.43 | 5.31 |
4 | 3.65 | 3.08 | 1.43 | 0.00 | 5.16 |
5 | 5.63 | 5.43 | 5.31 | 5.16 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 70.72 | 59.63 | 52.47 |
2 | 100.00 | 100.00 | 100.00 | 98.14 | 58.94 |
3 | 70.72 | 100.00 | 100.00 | 100.00 | 57.99 |
4 | 59.63 | 98.14 | 100.00 | 100.00 | 96.89 |
5 | 52.47 | 58.94 | 57.99 | 96.89 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 35.09% helical, 16.60% extended, 48.30% loops/other (query: 31.82% 20.28% 47.90%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2BDW_A not_found 95.95.95.3 NONE -73.286 0 1 91.96% 41.06% OPTM -1318.155 -845.630 14.020 0.677 0.963 0.918 0.999 100.230 -120.5 23.220 641.000 -642.5 39.600 640.500 -754.5 0.720 1.780 -46.9 9.030 28.640 -92.3 14.280 87.750 -95.0 52.680 136.670 -172.9 16.090 108.360 -130.6 39.580 120.800 -186.8 -30.000 104.000 -187.0 -30.000 92.000 -209.0 37.850 995.000 -920.0 123.510 973.000 -1026.0 10.980 118.000 -207.0 20.820 156.000 -273.0 5.000 -1.0 -4.009 -15.4 0.000 -9.3e+061 5.000 -1.0 0.544 -63.4 0.27 0.86
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----HHEEEE--------EEEEEEEEE-----EEEEEEE-HHH---HHHHHHHHHHHHHHH-----EEEEEEE------E
Query: 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96
Sbjct: 5 STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH 84
--HHHHHEEEEEEEEEE--EEEEEEEE-----EEEEEEEE-----HHHHHHHHHHHHHHHH--------EEEEEE---EE
EEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EE-------EEEE-------EEEEEE-EEEEE--
Query: 97 YIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176
Sbjct: 85 YLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 164
EEEE-------HHHHH-------HHHHHHHHHHHHHHHHHHHH------------EEE--------EEE-----------
--EEE-E--------HHHH- -------EEHHHHHHHHHHH----------HHHHHHHHHH--------------HHHHH
Query: 177 NTKMKDRIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKD 255
Sbjct: 165 SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKS 244
---------------HHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHH--------------HHHHH
HHHHH----HHH---HHHHH----
Query: 256 LIRKMLTFHPSLRITATQCLEHPW 279
Sbjct: 245 LIDSMLTVNPKKRITADQALKVPW 268
HHHHH----------HHHH---HH
263 residues (91.96%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 36.00% helical, 17.82% extended, 46.18% loops/other (query: 31.82% 20.28% 47.90%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2V7O_A not_found 95.95.95.3 NONE -73.594 0 1 94.06% 43.49% OPTM -1330.360 -726.790 14.408 0.670 0.902 0.916 0.973 97.710 -117.9 27.840 772.000 -775.0 45.630 671.000 -816.5 5.670 27.900 -76.7 10.550 39.010 -93.7 20.810 137.630 -146.3 39.660 139.050 -176.3 26.770 154.450 -173.0 45.100 128.340 -191.5 -30.000 127.000 -208.0 -30.000 97.000 -213.0 44.830 1086.000 -1003.0 113.380 995.000 -1049.0 12.590 142.000 -245.0 19.450 147.000 -269.0 5.000 -1.0 -3.832 -16.3 0.000 -9.3e+061 5.000 -1.0 1.362 -65.0 0.29 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--------- -HHEEEE--------EEEEEEEEE-----EEEEEEE-HHH---HHHHHHHHHHHHHHH-----EEEE
Query: 11 RENLYFQGT----FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKL 86
Sbjct: 13 TENLYFQMATCTRFTDDYQLFEELGKG-FSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRL 91
-HHHHH------HHHHHEEEEEEEEE- -EEEEEEEE----EEEEEEEEE-----HHHHHHHHHHHHHHHH--------E
EEE------EEEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EE-------EEEE-------EEEE
Query: 87 FEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKII 166
Sbjct: 92 HDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLA 171
EEEEE---EEEEEEE------HHHHHH------HHHHHHHHHHHHHHHHHHHH--EE--------EEE--------EEE-
EE-EEEEE- ---EEE-E--------HHHH- -------EEHHHHHHHHHHH----------HHHHHHHHHH--------
Query: 167 DFGLSTCFQ-QNTKMKDRIGTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLP 244
Sbjct: 172 DFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSP 251
-----EE-------------------HHHHH------HHHHHHHHHHHHHHHH---------HHHHHHHHH---------
------HHHHHHHHHH----HHH---HHHHH----
Query: 245 QWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPW 279
Sbjct: 252 EWDTVTPEAKNLINQMLTINPAKRITADQALKHPW 286
------HHHHHHHHHH----------HHHH---HH
269 residues (94.06%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 38.08% helical, 17.69% extended, 44.23% loops/other (query: 31.82% 20.28% 47.90%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1MQ4_A d.144.1.7 126.77.77.26 NONE -73.654 0 1 91.26% 34.20% OPTM -1355.147 -718.200 11.260 0.651 0.863 0.957 0.986 83.920 -103.6 22.410 544.000 -525.0 36.200 484.500 -577.5 3.180 11.300 -35.1 2.280 11.140 -73.4 17.610 80.260 -71.7 13.400 64.820 -104.7 26.110 125.940 -121.5 29.150 80.250 -143.8 -30.000 117.000 -187.0 -30.000 82.000 -199.0 37.700 912.000 -780.0 84.910 777.000 -835.0 11.490 124.000 -194.0 14.210 118.000 -229.0 5.000 -73.0 -4.373 -15.9 -70.000 364.0 5.000 -74.4 0.519 -42.5 0.26 0.82
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----HHEEEE--------EEEEEEEEE-----EEEEEEE-HHH---H HHHHHHHHHHHHHH-----EEEEEEE------
Query: 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK-DTSTILREVELLKKLDHPNIMKLFEILEDSSS 95
Sbjct: 126 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATR 205
-------EEEEEEEEE----EEEEEEE-----EEEEEEEEHHHHHHH--HHHHHHHHHHHHH--------EEEEEE---E
EEEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EE-------EEEE-------EEEEEE-EEEEE-
Query: 96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175
Sbjct: 206 VYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSA---GELKIADFGWSVHAP 282
EEEEE-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHH--EE--------EEE--- --EEE------EE--
---EEE-E--------HHHH--- -----EEHHHHHHHHHHH----------HHHHHHHHHH--------------HHHH
Query: 176 QNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAK 254
Sbjct: 283 ---SSRTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTF--PDF--VTEGAR 355
-------------HHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHH----- --- --HHHH
HHHHHH----HHH---HHHHH----E-----
Query: 255 DLIRKMLTFHPSLRITATQCLEHPWIQKYSS 285
Sbjct: 356 DLISRLLKHNPSQRPMLREVLEHPWITANSS 386
HHHHHH----------HHHHH--HHHHHH--
261 residues (91.26%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 30.38% helical, 21.52% extended, 48.10% loops/other (query: 31.82% 20.28% 47.90%)
SCOP classification:
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
2NP8_A not_found 95.95.95.3 NONE -73.703 0 1 55.59% 32.30% OPTM -679.181 -482.640 4.799 0.660 0.750 0.976 0.988 42.370 -60.3 4.250 73.000 123.0 19.330 230.000 -322.0 0.550 4.150 82.7 1.240 4.370 -45.0 5.180 25.360 105.2 13.700 45.600 -72.0 8.470 21.680 72.8 21.840 45.470 -90.5 -30.000 15.000 -14.0 -30.000 29.000 -120.0 16.610 312.000 -98.0 40.120 406.000 -467.0 -0.870 29.000 183.0 9.930 52.000 -114.0 5.000 -41.0 -3.098 -14.3 0.000 -9.3e+061 5.000 -74.4 0.519 -42.5 -0.00 0.95
alignment source: OPTM
---HHEEEE--------EEEEEEEEE-----EEEEEEE-HHH---H HHHHHHHHHHHHHH-----EEEEEEE------E
Query: 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK-DTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96
Sbjct: 127 QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV 206
------EEEEEEEE------EEEEEE-----EEEEEEEEHHHHHHH--HHHHHHHHHHHHH--------EEEEEE---EE
EEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EE-------EEEE-------EEEEEE-EEEEE--
Query: 97 YIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176
Sbjct: 207 YLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAG---ELKIADFGWSVHAPS 283
EEEE-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHH------------EEE---- -EEE-----------
--
Query: 177 NT 178
Sbjct: 284 SR 285
--
159 residues (55.59%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 36.26% helical, 18.32% extended, 45.42% loops/other (query: 31.82% 20.28% 47.90%)
SCOP classification: [Alpha and beta proteins (a+b)]/[Protein kinase-like (PK-like)]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
d.144.1.7.15_A d.144.1.7 126.77.77.26 NONE -73.744 0 1 91.96% 34.57% OPTM -1344.243 -881.030 11.373 0.646 0.796 0.966 0.988 82.650 -102.7 23.100 547.500 -534.5 34.110 488.000 -587.0 5.730 21.400 -54.1 5.690 25.190 -74.0 19.010 88.630 -92.5 24.930 85.070 -115.7 27.230 133.020 -133.2 31.480 93.380 -152.8 -30.000 115.000 -189.0 -30.000 85.000 -202.0 35.550 838.500 -738.0 83.030 732.000 -793.0 11.020 136.000 -193.0 16.350 112.000 -233.0 5.000 -74.0 -4.336 -15.7 0.000 -9.3e+061 5.000 -74.0 0.505 -42.4 0.30 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
----HHEEEE--------EEEEEEEEE-----EEEEEEE-HHH- --HHHHHHHHHHHHHHH-----EEEEEEE------
Query: 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA-KNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS 95
Sbjct: 126 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATR 205
-------EEEEEEEEE---EEEEEEEE-----EEEEEEEEHHHHHH---HHHHHHHHHHHH---------EEEEEE---E
EEEEEEE----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---EE-------EEEE-------EEEEEE-EEEEE-
Query: 96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175
Sbjct: 206 VYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAG---ELKIADFGWSVHAP 282
EEEEEE------HHHHHHHH----HHHHHHHHHHHHHHHHHHHH------------EEE---- -EEE----------
---EEE-E--------HHHH--- -----EEHHHHHHHHHHH----------HHHHHHHHHH--------------HHHH
Query: 176 QNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAK 254
Sbjct: 283 SSRRTTL-CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTF--PDF--VTEGAR 357
----EE- -EE-----HHHH--------HHHHHHHHHHHHHHH---------HHHHHHHHH------ --- --HHHH
HHHHHH----HHH---HHHHH----E-----
Query: 255 DLIRKMLTFHPSLRITATQCLEHPWIQKYSS 285
Sbjct: 358 DLISRLLKHNPSQRPMLREVLEHPWITANSS 388
HHHHHH----------HHHHH--HHHHHH--
263 residues (91.96%) of query sequence aligned
DONE: Fri Aug 15 19:34:30 2008 EST