LOOPP parallel driver v5.0 (06/13/08 15:45 EDT) with LOOPP v3.0 (compiled Jul 11 2008 17:20:20)
[NEWSABLE] [HSHFL] [ENE] [NEWALICHOICE]
This is HTML output, the other options are plain text, CASP AL and CASP TS formats.
If an error occured during execution it is logged in plain text version only,
there is no need to look for an error if this file ends with 'DONE' statement.
STARTING:Fri Aug 15 19:37:43 2008 EST
INPUT:
sim_min = 40.0% minimum sequence identity (%)
sim_max = 80.0% maximum sequence identity (%)
len_dif = 20.0% maximum length difference (% of query sequence length)
between query and homolog
nmax = 1 maximum number of homologous sequences (including query sequence)
maxout = 5 maximum number of outputted matches
strict = 0 all alignments will be accepted from LOOPP results
for homologs; they will be translated to query sequence
alignments using BLAST results
casp = 5 maximum number of outputted matches in CASP format
align = 'g' only corresponding global alignments will be reported
maxdiff = 50.0% only alignments differing no more than 50.0% from the query
sequence will be reported, or when reject=0, corresponding local
alignments will be reported
reject = 1 alignments shorter more than 50.0% from the query sequence
will be rejected
seccut = 0.00 structures with sec. str. score below seccut will be rejected
secdb = 1 type of secondary structure description: 1 - DSSB, 0 - phi/psi map
tasktb = 11111111111111111111 type of initial calculations
pdbcut = 60.0% pdb sequence identity threshold (%)
pdbstop = 0 stop if PDB structure with similarity above pdbcut found
domains = 0 query sequence will be decomposed into putative domains if =1
maxall = 300 maximum number of models evaluated in the second stage
refstr = 0 if equal to 1 rmsd distances between all hits and a reference structure
will be reported
maxpdb = 5 number of top PDB hits added to the second stage scoring
maxdyn = 5 number of dynamic domain entries from database added to the second stage scoring
beautify = 0 use pdb beautifier
rmsdtables = 1 compute rmsd tables between hits
local LOOPP/BLAST database will be used
input file T0457
--> 320 residues, sequence name: T0457
Database: T:\CBSU\blastdb\20080108\nr
-> 73 homolog sequences with sequence identity from 40.0% to 80.0% satisfying length constraints found
-> 0 representatives will be used in search (nmax=1 including query sequence)
Histogram of all homolog sequences found by BLAST (e-value cutoff 0.01, length constr.) by sequence identity:
| 00%-10% | 10%-20% | 20%-30% | 30%-40% | 40%-50% | 50%-60% | 60%-70% | 70%-80% | 80%-90% | 90%-100% |
| 0 | 0 | 100 | 44 | 59 | 7 | 0 | 7 | 0 | 1 |
1 | 2 | 3 | 4 | 5 | |
1 | 0.00 | 2.95 | 1.00 | 1.61 | 1.51 |
2 | 2.95 | 0.00 | 3.03 | 3.02 | 2.86 |
3 | 1.00 | 3.03 | 0.00 | 3.04 | 3.78 |
4 | 1.61 | 3.02 | 3.04 | 0.00 | 2.89 |
5 | 1.51 | 2.86 | 3.78 | 2.89 | 0.00 |
Similarity table for hits: percentage of chain fitting below 3Å RMSD (Cells are shaded according to similarity starting at 30%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 99.45 | 98.90 | 100.00 |
3 | 100.00 | 99.45 | 100.00 | 78.45 | 65.66 |
4 | 100.00 | 98.90 | 78.45 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 65.66 | 100.00 | 100.00 |
Similarity table for hits: percentage of chain fitting below 6Å RMSD (Cells are shaded according to similarity starting at 50%)
1 | 2 | 3 | 4 | 5 | |
1 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
2 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
3 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
4 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
5 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
ALIGNMENTS
--> hit 1 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 40.22% helical, 14.67% extended, 45.11% loops/other (query: 45.00% 17.81% 37.19%)
SCOP classification: [Alpha and beta proteins (a/b)]/[DHH phosphoesterases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1WPN_A c.107.1.1 95.8.8.7 NONE -84.229 0 1 55.31% 18.08% OPTM -463.889 -380.130 1.831 0.537 0.666 0.892 0.941 21.870 -50.3 1.510 32.000 228.5 4.260 46.500 -127.0 -0.450 -3.520 120.2 -0.170 -2.920 -52.0 0.530 11.110 165.9 -0.470 1.470 -34.3 0.420 -1.350 127.2 10.650 17.880 -70.0 -30.000 18.000 -31.0 -30.000 30.000 -143.0 3.250 81.000 208.0 19.780 135.000 -184.0 0.220 23.000 175.0 10.240 39.000 -134.0 5.000 -15.7 -1.224 -13.2 0.000 -9.3e+061 5.000 -15.7 0.279 -0.1 0.28 0.84
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEE------HHHHHHHHHHHHHHHH----EEEE-------HHH---HHHHHH- ----- EEEEEE---
Query: 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDS---VYSDA------LVIVCDTAN 86
Sbjct: 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYA--LDYFKQESPRLVETAANEVNGVILVDHNER 79
--EEEE------HHHHHHHHHHHHHHHH----EEEEE-----HHHHHH HHH------EE---------EEEEE-----
------HHHH---EEEEEE----- -----EEEE-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH----
Query: 87 APRIDDQRYLNGQSLIKIDHHPAT--DQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLF 164
Sbjct: 80 QQSIKD--IEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENN--VKIEKEIAGLMLSAIISDSLLFKS 155
------ ----EEEEEEE-------------EEEE-----HHHHHHHHHHH-- ----HHHHHHHHHHHHHHH-----
----HHHHHHHHHHHH-- --HHHHHHHH
Query: 165 SNTSPHTMEVASQLLAYP-FNHNAELNKM 192
Sbjct: 156 PTCTDQDVAAAKELAEIAGVDAEEYGLNM 184
----HHHHHHHHHHHHHH---HHHHHHHH
177 residues (55.31%) of query sequence aligned
--> hit 2 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 30.22% helical, 14.67% extended, 55.11% loops/other (query: 45.00% 17.81% 37.19%)
SCOP classification: [Alpha and beta proteins (a/b)]/[DHH phosphoesterases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1K23_D c.107.1.1 95.8.8.7 NONE -84.909 0 1 56.56% 17.68% OPTM -430.482 -279.100 1.829 0.492 0.646 0.714 0.883 16.680 -42.3 0.980 18.500 66.5 2.660 30.500 -140.0 1.250 4.850 47.3 -0.200 -0.890 -53.9 0.720 7.490 94.6 0.140 0.880 -41.3 4.730 8.800 42.8 10.190 14.320 -73.5 -30.000 7.000 -77.0 -30.000 24.000 -152.0 4.670 107.000 62.0 13.160 104.000 -151.0 0.070 10.000 71.0 9.170 36.000 -141.0 5.000 -14.4 -0.924 -12.4 0.000 -9.3e+061 5.000 -13.4 0.505 0.1 0.25 0.64
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEE------HHHHHHHHHHHHHHHH----EEEE-------HHH---HHHHHH-- ---- EEEEEE
Query: 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSV-----------YSDA-LVIVCD 83
Sbjct: 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVN------GETQYALDYFKQESPRLVETAANEVNGVILVD 75
-EEEEE------HHHHHHHHHHHHHHHH---EEEEEE----- HHHHHHHHH------EE---------EEEEE-
------ ---HHHH---EEEEEE----- -----EEEE-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Query: 84 TANAPR-IDDQRYLNGQSLIKIDHHPAT--DQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTG 160
Sbjct: 76 HNERQQSIKD--IEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKYK---ENNVKIEKEIAGLL-SAIISDSL 149
---------- ----EEEEEEE-------------EEEE-----HHHHHH--- -------HHHHH-- HHHHHHH-
--------HHHHHHHHHHHH-- --HHHHHHHH----
Query: 161 RFLFSNTSPHTMEVASQLLAYP-FNHNAELNKMSEKD 196
Sbjct: 150 LFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNLKAGA 186
--------HHHHHHHHHHHHH----HHHHHH------
181 residues (56.56%) of query sequence aligned
--> hit 3 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 38.89% helical, 20.59% extended, 40.52% loops/other (query: 45.00% 17.81% 37.19%)
SCOP classification: [Alpha and beta proteins (a/b)]/[DHH phosphoesterases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
c.107.1.1.1_A c.107.1.1 95.8.8.7 NONE -85.018 0 1 92.81% 13.47% OPTM -986.123 -646.850 3.963 0.523 0.682 0.913 0.943 33.870 -67.9 1.150 18.500 -51.5 5.460 56.000 -159.5 1.140 10.530 -32.4 1.020 -0.730 -73.4 0.810 8.990 8.1 0.280 4.920 -48.1 4.830 5.150 -47.9 17.840 39.410 -112.5 -30.000 41.000 -203.0 -30.000 55.000 -224.0 7.170 151.500 -63.0 16.760 130.000 -177.0 2.580 43.000 -122.0 7.980 57.000 -187.0 5.000 -15.1 0.366 -11.7 0.000 -9.3e+061 5.000 -15.1 0.519 0.2 0.08 0.82
alignment source: OPTM
--EEEEE------HHHHHHHHHHHHHHHH----EEEE-------HHH---HHHHHH- ----- EEEEEE---
Query: 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDS---VYSDA------LVIVCDTAN 86
Sbjct: 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYA--LDYFKQESPRLVETAANEVNGVILVDHNER 79
--EEEE------HHHHHHHHHHHHHHHH----EEEEE-----HHHHHH HHH------EE---------EEEEE-----
------HHHH---EEEEEE----- -----EEEE-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH----
Query: 87 APRIDDQRYLNGQSLIKIDHHPAT--DQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLF 164
Sbjct: 80 QQSIKD--IEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENN--VKIEKEIAGLMLSAIISDSLLFKS 155
------ ----EEEEEEE-------------EEEE-----HHHHHHHHHHH-- ----HHHHHHHHHHHHHHH-----
----HHHHHHHHHHHH-- --HHHHHHHH-- --HHHHHHHHHHHHH-EE----EEEEEEEEEEEE------HHHH
Query: 165 SNTSPHTMEVASQLLAYP-FNHNAELNKMSE-----KDPKLMPFQGYVLQNFELSDSHEYCQIKITNDVLKQFDIQPNEA 238
Sbjct: 156 PTCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISLDAKEFTLGS-KKVEIAQVNTVDIEDVKKRQAEL 234
----HHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHH----EEEEEE-- EEEEEEEEEE--HHHHH--HHHH
HHHHHHHH-----EEEEEEEE-- -EEEEEEE-----HHHHHHH------HHH--EEE-- HHHHHHHHHHHHHHH
Query: 239 SQFVNTVADISGLKIWMFGVDEG--DQIRCRIRSKGITINDVANQFGGGGHPNASGVSVYS-WDEFEELAQALRQKL 312
Sbjct: 235 EAVISKVVAEKNLDLFLLVITDILENDSLALAIGNEA--AKVEKAFNVTLEN--NTALLKGVVSRKKQVVPVLTDAM 307
HHHHHHHHHH----EEEEEEEE----EEEEEEE---- HHHHHHH------ -EEEEE----HHHH-HHHHHHHH
297 residues (92.81%) of query sequence aligned
--> hit 4 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 39.81% helical, 19.09% extended, 41.10% loops/other (query: 45.00% 17.81% 37.19%)
SCOP classification: [Alpha and beta proteins (a/b)]/[DHH phosphoesterases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1WPP_A c.107.1.1 95.8.8.7 NONE -85.159 0 1 93.13% 15.44% OPTM -806.878 -622.130 4.580 0.494 0.625 0.892 0.927 34.730 -71.2 3.460 97.500 -116.5 6.160 91.000 -188.5 -0.830 -3.970 -15.7 -0.450 -7.900 -66.2 0.340 11.080 14.0 0.980 0.480 -44.1 10.030 41.500 -77.2 21.020 43.950 -119.1 -30.000 45.000 -204.0 -30.000 57.000 -223.0 11.620 240.500 -153.0 28.550 198.000 -244.0 3.740 54.000 -138.0 9.110 58.000 -189.0 5.000 -15.7 -0.314 -13.3 0.000 -9.3e+061 5.000 -15.7 0.041 -1.5 0.12 0.87
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEE------HHHHHHHHHHHHHHHH-- --EEEE-------HHH---HHHHHH- ----- EEEEEE--
Query: 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFP-EKNIYATGEAEPSLSFIGDLDEIDDS---VYSDA------LVIVCDTA 85
Sbjct: 2 SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFV--LDYFGVAAPRVITSAKAEGAEQVILTDHN 79
--EEEE------HHHHHHHHHHHHHHHHH----EEE-------HHHHHH HHHH-----------------EEEEE---
---- ---HHHH---EEEEEE----- -----EEEE-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--
Query: 86 NAPR-IDDQRYLNGQSLIKIDHHPAT--DQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRF 162
Sbjct: 80 EFQQSVAD--IAEVEVYGVVDHHRVANFETASPLYMRLEPVGSASSIVYRMFKEHG--VAVPKEIAGLMLSGLISDTLLL 155
-------- ----EEEEEEE-------------EEEE-----HHHHHHHHHHH-- ----HHHHHHHHHHHHHHH---
------HHHHHHHHHHHH-- --HHHHHHHH----HHHHHHHHHHHHH- EE----EEEEEEEEEEEE------HH
Query: 163 LFSNTSPHTMEVASQLLAYP-FNHNAELNKMSEKDPKLMPFQGYVLQNF-----ELSDSHEYCQIKITNDVLKQFDIQPN 236
Sbjct: 156 KSPTTHPTDKVIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNG-NNVRVAQVNTVDIAEVLERQA 234
------HHHHHHHHHHHHHH---HHHHHHHHHHH--------HHHH----EEEEEE-- EEEEEEEEEE--HHHHH--HH
HHHHHHHHHH----- EEEEEEEE---EEEEEEE-----HHHHHHH------HHH--EEE-- HHHHHHHHHHHHHHHH
Query: 237 EASQFVNTVADISGL--KIWMFGVDEGDQIRCRIRSKGITINDVANQFGGGGHPNASGVSVYS-WDEFEELAQALRQKLL 313
Sbjct: 235 EIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGS--NMDKVEAAFNFVLEN--NHAFLAGAVSRKKQVVPQLTESFN 310
HHHHHHHHHHHHH---EEEEEEEE----EEEEEEEE- -HHHHHHHH------ -EEEE-----HHHH-HHHHHHHHH
298 residues (93.13%) of query sequence aligned
--> hit 5 [All-atom model (PDB)] [view all-atom model (PDB) with Chime] [PIR alignment file] [PDB file (backbone only)] [view PDB file (backbone only) with Chime] [hit list]
secondary structure: 39.81% helical, 19.42% extended, 40.78% loops/other (query: 45.00% 17.81% 37.19%)
SCOP classification: [Alpha and beta proteins (a/b)]/[DHH phosphoesterases]
name SCOP SCOP_stat confidence score homolog hits length seq. align ENE TE13 old CGenergy SIFT2 tma1 tma2 |-------OPTM------| |-------SEQ (global)-------| |-------SEQ (local)-------| |-------TRD (global)-------| |-------TRD (local)-------| |-------TRS (global)-------| |-------TRS (local)-------| |-------TSS (global)-------| |-------TSS (local)-------| |-------TSC (global)-------| |-------TSC (local)-------| |-------PSM (global)-------| |-------PSM (local)-------| |-------SRF (global)-------| |-------SRF (local)-------| |-------TBLS------| |-------KMER------| |-------CFTR------| |-------TBSS------| |-------SBLS------| sec. str.
(%) ident. src. all-atom all-atom score all-atom all-atom all-atom all-atom r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy zscore r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy r-energy energy pos. comp.
1K20_A c.107.1.1 95.8.8.7 NONE -85.276 0 1 93.13% 16.11% OPTM -678.089 -717.310 4.032 0.493 0.665 0.902 0.937 36.990 -71.2 2.250 75.500 -83.5 6.440 95.500 -190.5 0.750 0.270 -23.8 0.830 -0.680 -70.8 1.070 7.150 9.7 0.460 0.340 -41.1 6.140 21.250 -55.9 17.770 39.310 -114.8 -30.000 43.000 -203.0 -30.000 56.000 -223.0 9.940 212.000 -126.0 29.460 211.000 -255.0 1.260 43.000 -113.0 5.390 42.000 -165.0 5.000 -16.0 0.073 -12.4 0.000 -9.3e+061 5.000 -16.0 0.041 -1.8 0.14 0.86
alignment source: OPTM
+++ there is a problem with all-atom model, click here for details
--EEEEE------HHHHHHHHHHHHHHHH-- --EEEE-------HHH---HHHHHH- ----- EEEEEE--
Query: 16 ETIIIHRHVRPDPDAYGSQLGLKLYLERKFP-EKNIYATGEAEPSLSFIGDLDEIDDS---VYSDA------LVIVCDTA 85
Sbjct: 2 SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFV--LDYFGVAAPRVITSAKAEGAEQVILTDHN 79
--EEEE------HHHHHHHHHHHHHHHHHH---EEE-------HHHHHH HHHH-----------------EEEEE---
---- ---HHHH---EEEEEE----- -----EEEE-----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--
Query: 86 NAPR-IDDQRYLNGQSLIKIDHHPAT--DQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRF 162
Sbjct: 80 EFQQSVAD--IAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHS--VAVSKEIAGLMLSGLISDTLLL 155
-------- ----EEEEEEE-------------EEEE-----HHHHHHHHHHH-- ----HHHHHHHHHHHHHHH---
------HHHHHHHHHHHH-- --HHHHHHHH----HHHHHHHHHHHHH- EE----EEEEEEEEEEEE--- -
Query: 163 LFSNTSPHTMEVASQLLAYP-FNHNAELNKMSEKDPKLMPFQGYVLQNF-----ELSDSHEYCQIKITNDVLKQF----D 232
Sbjct: 156 KSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNG----NNVRVAQVNTVDIAEVLE 231
------HHHHHHHHHHHHHH---HHHHHHHHHH---------HHHH----EEEEEE-- EEEEEEEEEE--HHHHH-
--HHHHHHHHHHHH-----EEEEEEEE--- EEEEEEE-----HHHHHHH------HHH--EEE--HHHHHHHHHHHHHH
Query: 233 IQPNEASQFVNTVADISGLKIWMFGVDEGD-QIRCRIRSKGITINDVANQFGGGGHPNASGVSVYSWDEFEELAQALRQK 311
Sbjct: 232 RQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGS--NMDKVEAAFNFVLENN-HAFLAGAVSRKKQVVPQLTES 308
-HHHHHHHHHHHHHHH---EEEEEEEE----EEEEEEEE- -HHHHHHHH------- EEEEE----HHHH-HHHHHHH
HH
Query: 312 LL 313
Sbjct: 309 FN 310
HH
298 residues (93.13%) of query sequence aligned
DONE: Sat Aug 16 02:12:13 2008 EST