Welcome to the BioHPC Next Generation sequencing
data management and analysis pipelines interface

This interface serves the purpose of storing and management of various data files to be used and processed by the Next Generation Sequencing analysis tools available through BioHPC. To run the tools on your data stored here, go to the BioHPC interface page.

The functions of this site are the following:

Lane Browser: Access and manage the results of Illumina sequencing runs performed by the Sequencing Facility at Cornell CLC. Illumina read files obtained outside of this facility can also be catalogued and stored here. The files are stored at CBSU file server. The file retention time is 30 days since the initial upload.

File Manager: Upload and manage other types of files involved in data analysis, such as reference genomes or genome annotation files. Intermediate result files from BioHPC jobs may also be stored here if requested at submission.

Pipelines (preliminary version): a tool to construct and run various analysis pipelines out of applications available through BioHPC, operating on the files stored and catalogued here without the need to re-upload them from each individual calculation. An example-based tutorial on the usage of pipelines at BioHPC can be found here.

In order to use this interface, you need to be loged in to the BioHPC site at Computational Biology Service Unit (CBSU). Please use the Login button on the left, or contact CBSU.