Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page. NOTE: Do not use "Back" button in your browser to reaccess this page after submitting. Use menu on the left instead.

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Job name:   (please, no spaces, special characters etc., uderscore is OK)

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Query  file (Required):   uploadcopypaste

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Choose database for BLAST: from listcopyupload

BLAST program: blastn blastp blastx tblastn tblastx megablast  Run: Batch Real-time  nodes:    Cluster: 
( Show timeout info )

NOTE: P-BLAST currently uses nodes in exclusive mode so you select full nodes, not CPUs above.

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Options:

Output File Format:  Tab Delimited (-m 8) Standard (plain text, -m 0) CBSU Standard CBSU Standard 2 (no seq) CBSU -m 8 CBSU -m 8 extended Query-anchored w/identities (-m 1) Query-anchored no identities (-m 2) Flat query-anchored, w/identities (-m 3) Flat query-anchored, no identities (-m 4) Query-anchored no identities, blunt ends (-m 5) Flat query-anchored, no identities, blunt ends (-m 6) XML (-m 7) HTML (-m 0 -T T) Cutoff E-value:   Iterative run?  Initial timeout for one sequence (sec) keep timeout always equal initial timeout

Low Complexity Filter:  Yes No Seeds only Maximum Targets: Minimum Query Length: Block size  Regular timeout for one sequence is  times average or maximum BLAST execution time

Extra BLAST options: (e.g. -T)