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Version 1 Rev 226
(2009/11/20 11:35:46)

P-BLAST @ BioHPC

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.

NOTE: Do not use "Back" button in your browser to reaccess this page after submitting. Use menu on the left instead.


     E-mail:  
(only guests need to use this field, registered users should log in)
 
Job name (please, no spaces, special characters etc., uderscore is OK)
Query  file (Required):   uploadcopypaste
(for guest users only first 10 sequences from the uploaded/copied/pasted file will be processed)


Choose database for BLAST:

BLAST program:  Run:  nodes:    Cluster: 
( Show timeout info )

NOTE: P-BLAST currently uses nodes in exclusive mode so you select full nodes, not CPUs above.


Options:

Output File Format: 

Cutoff E-value:

 

Iterative run?

 Initial timeout for one sequence (sec)
keep timeout always equal initial timeout


Low Complexity Filter: 

Maximum Targets:

Minimum Query Length:

Block size 

Regular timeout for one sequence is  times
 or  BLAST execution time

Extra BLAST options: (e.g. -T)

   

Messages:
All clusters operating normally

All applications active