The LOOPP (Learning, Observing and Outputting
Protein Patterns) server. LOOPP is a fold recognition program based on the
collection of numerous signals, merging them into a single score, and
generating atomic coordinates based on an alignment into a homologue template
structure. The signals we are using include straightforward sequence alignment,
sequence profile, threading, secondary structure and exposed surface area
prediction. For more information please refer to the
LOOPP home page.
NOTE This server uses the
old version of LOOPP from 2008. There is
a new version (2010) available at
The work to add the new version of LOOPP
to the BioHPC suite is underway and
hopefully the new version will be
available from BioHPC Cornell server soon.
have any comments or questions about
BioHPC LOOPP server please contact us at
If you have any questions about LOOPP
algorithm please contact
It may take several hours to run this program.
Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.
Please acknowledge us in all publications and presentation of work
that used our resources using the following
no spaces, special characters etc., uderscore is OK)
Please notify me
about LOOPP updates
one-letter code only, no names, numbers etc):
This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.
means that the number of nodes will be chosen automatically)
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