BioHPC Site Logo

Cornell BRC Bioinformatics Facility
BioHPC Web Computing Resources
(compute nodes status)

User: guest | Login | Apps Home | FAQ |

APPLICATIONS
(click on a category below
to access programs)

   


MISCELLANEOUS
Subscribe
Apps Home
Clusters Status
Applications Statistics
BioHPC Home
Facility Home
Facility ftp server
Facility SeqDB
DISTRUCT
T-REX (T-RFLP manager)
Next-Gen@BioHPC
Reset Password
F A Q
Contact Us

Version 1 Rev 490
(2014/04/02 13:27:25)

Parallel MrBayes @ BioHPC
ver 3.1.2

MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. The program takes as input a character matrix in a NEXUS file format. The same input file must also contain the program's control commands (see FAQ page for a quick example). The output is several files with the parameters that were sampled by the MCMC algorithm.

For more information, please visit MrBayes Home Page and our FAQ page.

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.


     E-mail:  (only guests need to use this field, registered users should log in) 

Job name (please, no spaces, special characters etc., uderscore is OK)


Input  file:   
No format checks of your input file will be carried out. For more information on input file format click here or visit our FAQ page.
Cluster: This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.
 
( Show timeout info )

Number of processors will be assigned equal to the number of threads.

Messages:
Application P-IPRSCAN under maintenance:
Application TopHat under maintenance:
Application Cufflinks under maintenance:
Application HapMap Reads under maintenance: