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Version 1 Rev 226
(2009/11/20 11:35:46)

P-HMMER @ BioHPC

It may take on average about 2-5 minutes to process one sequence on a node, what means that 10 nodes may be able to process no more than 3,000 - 5,000 sequences per day. The jobs are limited to 24hrs execution time, so if your job takes longer than that it will require restarting. You may want to split very big fasta files and submit them separately. Please contact us at biohpc@cac.cornell.edu if you need any help.

For more information about the original program please check the program's documentation.


Job name (please, no spaces, special characters etc., uderscore is OK)


Query  file (Required):   uploadcopypaste
(for guest users only first 10 sequences from the uploaded/copied/pasted file will be processed)


Choose database for HMMER:     Output format:  

Run:  nodes:    Cluster:     ( Show timeout info )

NOTE: P-HMMER currently uses nodes in exclusive mode so you select full nodes, not CPUs above.


Options:

Cutoff E-value:

 Initial timeout for one sequence (sec)
keep timeout always equal initial timeout

Maximum Targets:

Regular timeout for one sequence is  times
 or  P-HMMER execution time

Extra HMMER options:

   

 
Messages:
All clusters operating normally

All applications active