Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.
Version of InterProScan currently installed is 4.3.1 with the following databases:
iprscan_DATA_16.2 and iprscan_PTHR_DATA_14.0.
It may take on average about 8-10
minutes to process one sequence on a node, what means that 10 nodes may be able
to process no more than 1,400 - 1,800 sequences per day. The jobs are limited
to 24hrs execution time, so if your job takes longer than that it will require
restarting. You may want to split very big fasta files and submit them
separately. Please contact us at biohpc@cac.cornell.edu
if you need any help.
For more information about the original program please check the
program's documentation at
EMBL.
Please acknowledge us in all publications and presentation of work
that used our resources using the following
text.
Job name:
(please,
no spaces, special characters etc., uderscore is OK)
Query file (Required): uploadcopypaste
Input sequences:
Output format:
Codon Table:
(for DNA sequences only)
Minimum AA sequence length:
Applications (check all you want to run):
Advanced
InterProScan options
iprlookup
goterms
nocrc
Job options:
Run:
nodes:
Cluster:
(
Show timeout info
)
NOTE: P-IPRSCAN currently uses nodes in exclusive mode so you select full nodes,
not CPUs above.
