This program identifies small repetitive sequences in a genome.

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.

Please acknowledge us in all publications and presentation of work that used our resources using the following text.

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E-mail:  (only guests need to use this field, registered users should log in)

Job name:   (please, no spaces, special characters etc., uderscore is OK)
                    Please notify me about RepeatFinder updates

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Input  file:   

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Cluster: This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.   Nodes:  0 means that the number of nodes will be chosen automatically (preferred).
( Show timeout info )

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Options : 

Block Size			Minimum Size of a repeat
Maximum Size of a repeat			Minimum Group Size
Maximum Deviation of Ends			Local Window
Minimum Overlapping (bp)			Minimum Overlapping (%)
i Scale			r Scale
Maximum Variability (%)			End Variability Cutoff (%)