Selection on Finite Sites under COmplex
Demographic Events (SFS_CODE)
is a flexible forward population genetic simulation program. With this
program, you can simulate several linked or unlinked loci (both coding
and non-coding, sex and autosomal) in a general island model with
complex demographic histories under a wide range of mutation models
and selective effects. A full description of the options available in
SFS_CODE are available here.
The source code and further information
can be obtained from the project website.
If you have any questions, please email
Ryan Hernandez (rhernandez@uchicago.edu).
Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.
You will need to supply a name for the job,
command-line options, and specify
the number of processors the job will be run on.
Upon job completion, the output file will be
available for htpp and ftp download via a link in a notification e-mail.
During the run, you
will be able to monitor the job's progress through a special link in notification emails.
Job name:
(total number of simulations performed = Nrep*Niter)
Enter command line options (no newlines or special characters, please!)
Exclude program name and any information provided above. Options
--outfile (
-o) and
--seed
(
-s) will be supplied automatically and may be omitted. Option
-F is not supported.
Maximum number of processors to use
(lowering the number of processors may allow the job to start sooner, but it will increase the time
of the calculation)
Cluster:
This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.
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