Given a set of sequences (proteins or DNA), T-COFFEE generates a multiple sequence alignment. The currently installed version is 4.45. For detailed description of T-COFFEE program and for literature references please consult the T-COFFEE web page.

Through this interface you will be able to use the following functions of T-COFFEE:
1. Perform a simple alignment of several sequences (provided in FASTA format)
2. Realign one or more sequences on an existing alignment.

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.

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E-mail:   (only guests need to use this field, registered users should log in)

Enter job name:                                         

Final alignment will be written to the file:   (downloadable upon job completion)

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Run  type:  simple alignment    align on existing alignment  

Sequence  type:   Auto     Protein     DNA  

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Paste your sequences (FASTA format) in the box below

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These command line options will be set automatically:

For full description of all available program options refer to T-COFFEE documentation.

Additional command line options (may be left blank):

Cluster: This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.   ( Show timeout info )