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Version 1 Rev 490
(2014/04/02 13:27:25)

InStruct @ BioHPC

InStruct implements the Markov Chain Monte Carlo algorithm for the generalized Bayesian clustering method to estimate the self-fertilization rates and cluster individuals into subpopulations simultaneously using genotype data consisting of unlinked markers. For more information about the program please refer to the documentation.

Sources of InStruct can be found here.
Executables can be downloaded for the following platforms:
MS Windows (32bit)
MS Windows (64bit)
Linux (64bit)
Mac OSX (PowerPC)
Mac OSX (Intel) - complements of Patrick Meirmans (University of Amsterdam)

Calculations will be carried out on the BioHPC compute cluster at CBSU. You will receive e-mail notifications when the job is submitted, when it starts, and when it is finished. Output will be available via links embedded in the notification e-mails. For more information about this program and BioHPC interface in general, please visit our Frequently Asked Questions page.

Please acknowledge us in all publications and presentation of work that used our resources using the following text.

     E-mail:  (only guests need to use this field, registered users should log in) 

Job name (please, no spaces, special characters etc., uderscore is OK)


Input  file:
Initial  file (optional):

Options: (for more information see documentation , example of input file and example of initial file)

Number of diploid individuals (NUM_INDV): 

Number of loci (NUM_LOCI) : 

Random number generator seeds (SEEDS):
 
(0 means it will be automatically generated based on the system clock) 
 
MODE:
Number of extra columns (EXTRA_COLS):

Marker names exist at the beginning of data file:
(MARKER_NAMES)

Empty cluster:
(EMPTY_CLUSTER)
SAMPLER: Prior Choice:
(PRIOR_CHOICE)
LABEL: POPDATA:

    
Missing data (MISS_DATA):
Number of subpopulations assumed:
(POP_NUM)
Signinificance level:
(SIG_LEVEL)
Number of MCMC chains (CHN_NUM):

Number of iterations per chain:
(ITER_NUM)

Burn-in iterations (BURNIN): Thinning (THINNING):

GR_FLAG: 
 

CONV_ITER:
PRINT_ITER: PRINT_FREQ:

:
         K-LOWER  K-UPPER

 (CONVFILE)
Maximum memory allowed (MAX_MEM): bytes Data format (DATA_FMT):
Distruct format (DISTR_FMT):

Cluster: This application can't run at this time - no suitable clusters
or you are not authorized to use the service.
The service is available only to Cornell students, faculty, and staff.
 
( Show timeout info )

Messages:
Application P-IPRSCAN under maintenance:
Application TopHat under maintenance:
Application Cufflinks under maintenance:
Application HapMap Reads under maintenance: